Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0677 ATGTCTTCTCCCAGTAAACGTCGAGAGATGGACTTGATGAAGCTGATGATGAGCGATTACAAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTCTGTGCACTTTCACGGGCCTAAAGACAGTCCTTATCATGAAGGTGTATGGAAGATTAGAGTAGAGCTGCCTGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAATAAAATATACCACCCTAATGTTGATGAAATGTCAGGCTCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGTACTTCTGGATTTCACCAATTTTGTATTTTTATTTTCAGACCTTGTTAATGTATTTGAAGTTTTTCTTCCTCAACTTCTTCTGTATCCCAACCCATCAGATCCATTGAATGGTGAAGCTGCTGCACTGATGATGCGTGATCGTGCTGCGTATGATCAAAAAGTCAAAGAATATCGTGAGAAGTATGCCAAGCCAGAAGATGTTGGTGCTACTCAGGATGAAAAATCTAGTGATGATGAGGAGTTGAGTGAAGACGATTATGGCTCCAGTGATGAGGCAATTGCAGGGCAACCTGATCCTTGA 594 0.4108 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFSVHFHGPKDSPYHEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFVLLDFTNFVFLFSDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAYDQKVKEYREKYAKPEDVGATQDEKSSDDEELSEDDYGSSDEAIAGQPDP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0677 197 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lele52g0677 197 MobiDBLite consensus disorder prediction 157 197 - -
Lele52g0677 197 Pfam Ubiquitin-conjugating enzyme 10 155 IPR000608 -
Lele52g0677 197 FunFam Ubiquitin-conjugating enzyme 5, E2 1 172 - -
Lele52g0677 197 SMART ubc_7 4 161 - -
Lele52g0677 197 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 161 IPR000608 -
Lele52g0677 197 MobiDBLite consensus disorder prediction 157 173 - -
Lele52g0677 197 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 149 - -
Lele52g0677 197 CDD UBCc 7 155 IPR000608 -
Lele52g0677 197 SUPERFAMILY UBC-like 4 161 IPR016135 -
Lele52g0677 197 Gene3D Ubiquitin Conjugating Enzyme 1 174 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0677 Lele-ChrLele52 4292286 4294915 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0677 52 4292286 4294915 Lele52g0677 52 4292286 4294915 ECH
Lele49g0657 49 3985742 3988713 Lele52g0677 52 4292286 4294915 hybridization
Lele50g0687 50 4244723 4248400 Lele52g0677 52 4292286 4294915 hybridization