Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0687 ATGAATAATTCTGGGAGTCTATGCCAAGGGAACGAAACCAGTAAATGCGGAGTAAAACATGGAGCGGAGCACCGATACAGATTCTTCGCTTCAACTTTAAGCTTTGGGCAATTTCAGTTTCCATACTTGTATTTCAGCATTACACTTCCATCCACTTTCCTTCCTAATTACTGCATAGTCATTCCAATGAAAAGAAGAAGAAAAAACAAATTAGGAAGTGTTTATCTTCTCCTTCCATCTTTTGTTCTCAGCCTCTCACCCAGGCTTCAATCCATACTCGAGAAAAGTAAGAAAGAAAATATGTCTTCTCCCAGTAAACGTCGAGAGATGGACTTGATGAAGCTGATGATGAGCGATTACAAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTATGTGCACTTTCACGGGCCTAAAGACAGTCCTTATCATGAAGGTGTATGGAAGATTAGAGTAGAGCTGCCTGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAATAAAATATACCACCCTAATGTTGATGAAATGTCTGGCTCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGACCTTGTTAATGTATTTGAAGTTTTTCTTCCCCAACTTCTTCTGTATCCCAACCCATCAGATCCATTGAATGGTGAAGCTGCTGCACTGATGATGCGTGATCGTGCTGCGTATGATCAAAAAGTTAAAGAATATCGTGAAAAGTATGCCAAGCCAGAAGATGTTGGTGCTACGCAGGATGAAAAATCTAGTGATGATGAGGAGTTGAGTGAAGACGATTATGGCTCTAGTGATGAGGCAATTGCAGGGCAACCTGATCCTTGA 855 0.407 MNNSGSLCQGNETSKCGVKHGAEHRYRFFASTLSFGQFQFPYLYFSITLPSTFLPNYCIVIPMKRRRKNKLGSVYLLLPSFVLSLSPRLQSILEKSKKENMSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPKDSPYHEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAAYDQKVKEYREKYAKPEDVGATQDEKSSDDEELSEDDYGSSDEAIAGQPDP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0687 284 CDD UBCc 107 242 IPR000608 -
Lele50g0687 284 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 129 236 - -
Lele50g0687 284 SUPERFAMILY UBC-like 104 248 IPR016135 -
Lele50g0687 284 SMART ubc_7 104 248 - -
Lele50g0687 284 MobiDBLite consensus disorder prediction 244 260 - -
Lele50g0687 284 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 100 248 IPR000608 -
Lele50g0687 284 Pfam Ubiquitin-conjugating enzyme 110 242 IPR000608 -
Lele50g0687 284 Gene3D Ubiquitin Conjugating Enzyme 94 260 IPR016135 -
Lele50g0687 284 MobiDBLite consensus disorder prediction 244 284 - -
Lele50g0687 284 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 173 189 IPR023313 -
Lele50g0687 284 FunFam Ubiquitin-conjugating enzyme 5, E2 101 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0687 Lele-ChrLele50 4244723 4248400 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0687 50 4244723 4248400 Lele50g0687 50 4244723 4248400 ECH
Lele50g0687 50 4244723 4248400 Lele51g0673 51 4086443 4089415 hybridization
Lele50g0687 50 4244723 4248400 Lele52g0677 52 4292286 4294915 hybridization