Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0671 ATGTGGATGTTTAGTAAGAGGGGGCCATCTGGATTCTCAGCCACTTCCACGGCGGAGCAAGTTACTGAAGGAATCGATGGAAACGGTCTCACTGCCATCGTCACAGGGGCATCGAGTGGTCTTGGACTTGAAACTGCCCGAGTTCTAGCATTGCGTGGTGTCCATGTGGTTATGGCTGTAAGGAATGTGGACTCTGGTATGAGCGTCAAAAACAAAATACTTGAGGAAATCCCCTCTGCTAAAATTGATGTTATGAAGTTAGATCTTAGCTCAATGGCATCAGTAAGGAAATTCGCTGCAGATTACAATTCCTCTGGTCTGCCTCTCAATATCCTAATTAATAATGCAGGAATTATGGCTGCCCCGTTCACACTTTCTCAAGACAACATTGAGTTGCAGTTTGCAACCAATCATTTAGGTCATTTTCTCTTAACAAACCTTTTGTTGGAAACTATGAAGAAAACTGTGCACGAATGCAAGCGGGAGGGAAGAATAATTATTGTATCATCAGAGGCACACAGATTTGCATATAAAGGAGGGATTTGTTTTGATAAGATCAATGATGAATCAGAATACAACGGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTGCATGCAAAAGAGCTTTCAAGACTCTTGAAGGAAGAAGGAGTGGAAATAACTGCTAACTCCCTTCATCCAGGGACGATTATAACAAATATTCTTCGGTATCATGGCTTCTTTAATGCCGTTGCTAGCGCCGTGGGAAAGTTCTTCCTTAAAAATGTTGAGCAGGGAGCTGCAACTCAATGTTATGTGGCATTGCATCCGCAAGTGAAGGAAATATCTGGTGAATATTTGATGGATAGCAACAAGGCAAATCCAAGCTCTCTGGCTACAGATTTAGAATTGGCCAGAAAACTCTGGGAATTCAGCTTGAGCCTCACAGATCCAAAGCAGTAA 951 0.4196 MWMFSKRGPSGFSATSTAEQVTEGIDGNGLTAIVTGASSGLGLETARVLALRGVHVVMAVRNVDSGMSVKNKILEEIPSAKIDVMKLDLSSMASVRKFAADYNSSGLPLNILINNAGIMAAPFTLSQDNIELQFATNHLGHFLLTNLLLETMKKTVHECKREGRIIIVSSEAHRFAYKGGICFDKINDESEYNGYFAYGQSKLANILHAKELSRLLKEEGVEITANSLHPGTIITNILRYHGFFNAVASAVGKFFLKNVEQGAATQCYVALHPQVKEISGEYLMDSNKANPSSLATDLELARKLWEFSLSLTDPKQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0671 316 Pfam short chain dehydrogenase 31 180 IPR002347 -
Lele52g0671 316 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lele52g0671 316 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lele52g0671 316 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lele52g0671 316 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Lele52g0671 316 CDD retinol-DH_like_SDR_c_like 29 305 - -
Lele52g0671 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Lele52g0671 316 Gene3D - 23 315 - -
Lele52g0671 316 PANTHER RETINOL DEHYDROGENASE 9 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0671 Lele-ChrLele52 4246251 4251168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0671 33 291 Acyl Lipid Metabolism Gene Families AT1G63380 27.437 9.58e-12 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0671 52 4246251 4251168 Lele52g0671 52 4246251 4251168 ECH
Lele49g0650 49 3926924 3930255 Lele52g0671 52 4246251 4251168 hybridization
Lele50g0679 50 4181978 4185886 Lele52g0671 52 4246251 4251168 hybridization