Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0679 ATGAGTCTGTCCGCTCCTGGACTGCGGTTGAAGGGCGTGATCGTGTTCTTTGAGAACAGAGAAAAAAATATGTGGATGTTTAGTAGGAGGGGGCCATCTGGATTCTCAGCCACTTCCACTGCGGAGCAAGTTACTGAAGGAATCGATGGAAACGGACTCACTGCCATCGTCACAGGGGCATCGAGTGGTCTTGGACTTGAAACTGCCCGAGTTCTAGCATTGCGTGGTGTCCATGTGGTTATGGCAGTAAGGAATGTGGACTCTGGTATGAGCGTCAAAAACAAAATACTTGAGGAAATCCCCTCTGCCAAAATTGATGTTATGAAGTTAGATCTTAGCTCAATGGCATCAGTAAGGAAATTCGCTGCAGATTACAATTCCTCTGGTCTGCCTCTCAATATCCTAATTAATAATGCAGGAATTATGGCTGCCCCGTTCACACTTTCTCAAGACAACATTGAGTTGCAGTTTGCAACCAATCATTTAGGTCATTTTCTCTTAACAAACCTTTTATTGGAAACTATGAAGAAAACTGTGCACGAATGCAAGCGGGAGGGAAGAATAGTTATTGTATCATCAGAGGCACACAGATTTGCATATAATGAAGGGATTTGTTTTGATAAGATCAATGATGAATCAGAATACAACGGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATTTTGAATGCAAAAGAGCTTTCAAGACGCTTGAAGGAAGAAGGAGTGGAAATAACTGCTAACTCCCTTCATCCAGGGACGATTATAACAAATATTCTTCGGTATCATGGCTTCTTTAATGCCGTTGCTAGCGCAGTGGGAAAGTTCTTTCTTAGAAATGTTGAGCAGGGAGCTGCAACTCAATGTTATGTGGCATTGCATCCACAAGTGAAGGAAATATCTGGTGAATATTTTACGGATAGCAACAAGGCAAATCCAAGCTCTCTGGCTACAGATTCAGAATTGGCCAGAAAACTCTGGGAATTCAGCTTGAGCCTCACAGATCCAAAGTAG 1017 0.4228 MSLSAPGLRLKGVIVFFENREKNMWMFSRRGPSGFSATSTAEQVTEGIDGNGLTAIVTGASSGLGLETARVLALRGVHVVMAVRNVDSGMSVKNKILEEIPSAKIDVMKLDLSSMASVRKFAADYNSSGLPLNILINNAGIMAAPFTLSQDNIELQFATNHLGHFLLTNLLLETMKKTVHECKREGRIVIVSSEAHRFAYNEGICFDKINDESEYNGYFAYGQSKLANILNAKELSRRLKEEGVEITANSLHPGTIITNILRYHGFFNAVASAVGKFFLRNVEQGAATQCYVALHPQVKEISGEYFTDSNKANPSSLATDSELARKLWEFSLSLTDPK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0679 338 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Lele50g0679 338 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Lele50g0679 338 PRINTS Glucose/ribitol dehydrogenase family signature 54 71 IPR002347 -
Lele50g0679 338 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Lele50g0679 338 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Lele50g0679 338 PANTHER RETINOL DEHYDROGENASE 32 335 - -
Lele50g0679 338 CDD retinol-DH_like_SDR_c_like 52 328 - -
Lele50g0679 338 Pfam short chain dehydrogenase 54 202 IPR002347 -
Lele50g0679 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 309 IPR036291 -
Lele50g0679 338 Gene3D - 46 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0679 Lele-ChrLele50 4181978 4185886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0679 56 314 Acyl Lipid Metabolism Gene Families AT3G55290 28.727 1.20e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0679 50 4181978 4185886 Lele50g0679 50 4181978 4185886 ECH
Lele50g0679 50 4181978 4185886 Lele52g0671 52 4246251 4251168 hybridization