Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0468 ATGCATAGGTCTGGTAACTGGTGGGCTGACATGAGGGTTGTGGCGCCTCCAGGAGAGGAAAAGGCGGTGAGAATCTGTAAGGTGACGGTGAAAGGAAACGATGTCACCAGCGTCGAGGCGCTTGTCCTTGACGTAACGGCTCCAGCCTTTGGTCAAGACGTAACTCTGGCTACTGTTCCAGTAAGAGTATCGGAAGCGCCAGCACTTGTCGAACTCGTCCTCAAAACTCAGCAAGACAGCCATACCGCTGAGTGGGAAGTACTTCTCGGCGTGCTGCTTGGGGATCACCAGTCGGTTCAGCTTCTCGACGTCGCTGGCCTTGCTGCTGCTGCTGCAATCACGCCGAAAATGAGGTGGAGGGATGATGAACGGTAATCGCACAATTTTCAACTTGGAAAAGTCTTGCTTCACACCTACACGATGGACTCACAACAGAGCAATCAATTTGAGACCGCTTCGCAACCCGACACTGGCAACGATGCTTACACTTTCCTCGAATTTAACACTCAGGGGGAAGATTTCGACTACCCTGAGTTCCGTGACTCGATTAGGTCCCCAGCGGCTTGGCCCACTCCGTCCGATTCGCTGGTTGACCCCATGGAGCGTGGCGGTGGGGGTGGAGCGGGTTCTGATCACCACTCCGATGCCTCGCCTGTTTCAGCTGCTCCAGGAAGCGCCACTAAAAACCGGGCAACTGGGTCAGGCTGCAGCGGGAACAGCCAGATGGTTGACACCCTGGCTACTGGAATGAGCGGGTTGAATTTTGAAGATACCGGTGATGATGACAATTATGAAATTGGTAAAGGAGATTTCACTGAACACGCTTGCCGATATTGTGGGGTATCGAACCCTGCATGTGTTGTGAGGTGTAATGTGCCTTCTTGTCGCAAATGGTTTTGTAACTCACGGGGGAACACGTCGGGTTCGCATATCGTAAATCACCTGGTTCGAGCAAAACACAAGGAAGTCTGTCTTCACAAAGATAGTCCTTTGGGAGAAACAATTCTCGAATGCTACAACTGTGGGTGTCGTAATGTATTTCTCCTTGGATTTATTTCTGCCAAGACAGAAAGCGTAGTTGTTCTTCTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAAGATATGAATTGGGATCTCAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCCTGCAGTGGCTTGTGAAGATTCCATCTGAACCGGAGCAGTTGAGAGCACGGCAAATAAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAAACCAATCCTGATGCTTCTCTTGAGGACCTTGAGAAACCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTAAAATATGAAGATGCATATCAGTATCAAAATGTTTTTGCTCCACTCATTAAGCTTGAAGCTGATTATGACAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTTACCATCCGATGGGATATTGGTCTTAATAAAAAACGCATTGCATACTTTGTATTTCCAAAGGAAGATAATGAGTTGCGTCTTGTACCTGGTGATGAATTACGGTTGCGTTATTCTGGGGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGCTAACTGCACTAGAGGAAGTTGCTCTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCAGTGGATGAGACTAGTGTAAGCGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGCAATACATTGCCTCGTCGCTTTGGTGCCCCTGGGCTTCCAGAGCTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCAGCAATTGTATATCACATGGCAAAACAAGGTCAGGGGCAGGTTTTGGTTTGTGCACCTAGCAATGTGGCTGTCGATCAGCTTGCTGAAAAGATAAGTTCTACTGGGTTGAAGGTTGTTAGGCTCTGTGCAAAGTCAAGAGAAGCTGTGAGTTCTCCAGTTGAGCACTTAACTCTTCATTATCAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGCTACAACAACTGAAAGACGAACAAGGTGAACTTTCCAGTAGTGATGAGAAAAAGTACAAAGCATTAAAACGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTTATCTGCTGCACGTGTGTTGGTGCTGGAGATCCTCGGCTGGCAAATTTTAGGTTTCGTCAGGTACTCATTGATGAGTCTACTCAGGCTACAGAACCTGAATGTCTCATTCCTTTGGTGCTTGGGGTCAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAGGCAGCTCGTGCAGGCCTTGCACAGTCACTTTTTGAACGACTTGTTCTTCTTGGTGTTAAACCAATTAGATTGCAGGTTCAATACCGTATGCATCCATCTCTCTCAGAATTCCCTTCGAATAGCTTTTATGAAGGCACCCTGCAAAATGGAGTTACTGTTAACGAAAGGCAATTATCAGGAATTGATTTTCCCTGGCCAGTGCCCAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAAATAAGTGCAAGCGGCACATCTTATTTGAATAGAACTGAGGCTGCAAATGTTGAAAAAATTGTAACTACTTTCTTAAGAAGTGGTGTAGTTCCTAATCAGATTGGTGTGATAACACCTTACGAGGGTCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCCCTCCGGCAACAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCATGTGTAAGGAGTAATGAGCATCAGGGCATTGGGTTTCTCAATGATCCCCGTAGGCTCAATGTTGCTTTGACCAGAGCTAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTGTGGAATAGCTTGTTGACGCACTACAAGGAACATGAGTGCCTGGTTGAAGGGCCTTTAAATAATTTGAAGCAGAGTTTGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGTCCTGGAGTTGCGGCCAGTGATAATTTTGGGTCAGTTGGCTCTGGCCCTACTTCTGATCGGAAGAGCAGCAGGGGCAGGGGATCTTATATGCCTCCTGGCCCATCAAACGGAACCCATAAGCCTGGTGTGCATCCATCTGGGTTTCCCATTCCAAGGGTACCTCTGCCAACTTTTGGTGGTCCCCAATCTCAGCCATATGCTATTCCAACTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCACCTCCAGGCAGTCGGGGTTTTGGTGCGGGACGAGGTAATGCTGGTGCCACAGTTGGCAATCATCTCCCGCACCAGCAAGGCACACAACAGTCCCTGGGGAATCTTGGATCTACTTTCAACTTTCCAGCTCTGGAAAATCCCAACAGTCAGCCATCTGTTGGTGTTCCATTATCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGAGCAAGCCAGTCGTTTAGAGATCAGTTTTCTGTGCCAGGAATGTCTCAGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTACTGATTTCTCTACCCAGGCTTCTCAGAGTGGGTATTCTGTTGATTATGTTACACAAGGAGCACAAGGTGGATTCCCTGGAAACTTTTTGAACCAGAATTCTCAAGCTGGATACTCACGTTTTGGTTCTGGAAATGATTTTATGTCTCAGGACTATATGACCCATGGATCACAAGGCCTTTTCACTCAGGTTGGCTTCAATGATCCCTTGCAAGATGATGCGCCAAAGAGCCAATTTGGTGTGGGTAATGCCAACCCTCTCCAGTCTCAGGGCTTGATGAATTCTCTCTACTCTCAACCTTTTGCTCACTACAACACAGCCGATGAACATGCAGGCTTCCCAGCCACAGCCTCAGCTGGGTCAGAGCTCCCAAAATCAGAAAATGCACTATAA 4218 0.4635 MHRSGNWWADMRVVAPPGEEKAVRICKVTVKGNDVTSVEALVLDVTAPAFGQDVTLATVPVRVSEAPALVELVLKTQQDSHTAEWEVLLGVLLGDHQSVQLLDVAGLAAAAAITPKMRWRDDERXSHNFQLGKVLLHTYTMDSQQSNQFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDSIRSPAAWPTPSDSLVDPMERGGGGGAGSDHHSDASPVSAAPGSATKNRATGSGCSGNSQMVDTLATGMSGLNFEDTGDDDNYEIGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEPEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTALEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSLVQFQKPKKIYNDRRLFYGGGPGVAASDNFGSVGSGPTSDRKSSRGRGSYMPPGPSNGTHKPGVHPSGFPIPRVPLPTFGGPQSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNAGATVGNHLPHQQGTQQSLGNLGSTFNFPALENPNSQPSVGVPLSQPGFANNMPVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYSVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDDAPKSQFGVGNANPLQSQGLMNSLYSQPFAHYNTADEHAGFPATASAGSELPKSENAL 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0468 1405 MobiDBLite consensus disorder prediction 1190 1240 - -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 1092 1240 - -
Lele52g0468 1405 CDD DEXXQc_UPF1 624 859 - -
Lele52g0468 1405 PANTHER DNA2/NAM7 HELICASE FAMILY 348 1117 IPR045055 -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 1096 1110 - -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 1383 1405 - -
Lele52g0468 1405 Gene3D - 480 568 - -
Lele52g0468 1405 Gene3D - 859 1070 IPR027417 -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 1341 1360 - -
Lele52g0468 1405 Pfam Type III restriction enzyme, res subunit 630 694 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele52g0468 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 1055 IPR027417 -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 175 241 - -
Lele52g0468 1405 Pfam AAA domain 837 1032 IPR041679 -
Lele52g0468 1405 Pfam RNA helicase UPF1, 1B domain 479 568 IPR040812 -
Lele52g0468 1405 Pfam RNA helicase (UPF2 interacting domain) 274 427 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lele52g0468 1405 FunFam regulator of nonsense transcripts 1 homolog 480 568 - -
Lele52g0468 1405 Pfam AAA domain 723 827 IPR041677 GO:0004386
Lele52g0468 1405 Gene3D - 588 858 IPR027417 -
Lele52g0468 1405 CDD SF1_C_Upf1 860 1049 IPR041679 -
Lele52g0468 1405 FunFam Regulator of nonsense transcripts 1 859 1070 - -
Lele52g0468 1405 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 765 IPR014001 -
Lele52g0468 1405 MobiDBLite consensus disorder prediction 220 241 - -
Lele52g0468 1405 CDD 1B_UPF1-like 480 567 IPR040812 -
Lele52g0468 1405 Gene3D - 710 762 - -
Lele52g0468 1405 CDD ZBD_UPF1-like 275 397 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0468 Lele-ChrLele52 2797882 2811022 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0468 52 2797882 2811022 Lele52g0468 52 2797882 2811022 ECH
Lele49g0439 49 2587055 2598975 Lele52g0468 52 2797882 2811022 hybridization
Lele50g0473 50 2728254 2739461 Lele52g0468 52 2797882 2811022 hybridization