Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0473 ATGAACTCACAACAGAGCAATCTATTTGAGACCGCTTCGCAACCCGACACTGGCAACGATGCTTACACTTTCCTCGAATTTAACACTCAGGGGGAGGATTTCGACTACCCGGAGTTCCGTGACTCGATTAGGTCCCCAGCGGCTTGGCCCACTCCGTCCGATTCGCTGGTTGACCCCATGGAGCGTGGCGGTGGGGGTGAAGCGGGTTCTGATCACCAGTCCGATGCCTCGCATGTTTCAGCTGCTCCAGGAAGCGCCACTAAAAACCGGTCAACTGGGTCAGGCTGCAGCGGGAACAGCCAGATGGTTGACACCCTGGCTGCTGGAATGAGCGGGTTGAATTTTGAAGATACCGGCGATGATGACAATTATGAATTTGGTAAAGGAGATTTCACTGAACATGCTTGCCGATATTGTGGGGTATCGAACCCTGCATGTGTTGTGAGGTGTAATGTGCCTTCTTGTCGCAAATGGTTTTGTAACTCACGGGGGAACACGTCGGGTTCGCATATCGTTCGAGCAAAACACAAGGAAGTATGTCTTCACAAAGACAGTCCTTTGGGAGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACAGAAAGTGTAGTTGTTCTTCTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAAGATATGAATTGGGATCTCAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCCTGCAGTGGCTTGTGAAGATTCCATCTGAACAGGAGCAGTTGAGAGCACGGCAAATAAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAAACCAATCCTGATGCTTCCCTTGAGGACCTTGAGAAACCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTCAAAATATGAAGATGCATATCAGTATCAAAATGTTTTTGCTCCCCTCATTAAGCTTGAAGCTGATTATGACAAGGTGGTGACTTCCATATTTGTCAGCTTTTTGTTATTGTCTGATTATTCTTCTGTTAATATGATGAAAGAATCTCAAAGCAAGGACAATGTTACCATCCGATGGGATATTGGTCTTAATAAAAAACGCATTGCATACTTCGTATTTCCAAAGGAAGATAATGAGTTGCGTCTTGTACCTGGTGATGAATTACGGTTGCGTTATTCTGGGGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGCTAACTGCACAAGAGGAAGTTGCTCTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGACGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCAGTGGATGAGACTAGTGTAAAGTTAGTTAGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGCAATACATTGCCTCGTCGCTTTGGTGCCCCTGGGCTTCCAGAGCTCAATGCATCTCAAGTTTTTGCTGTTAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCAGCAATTGTATATCACATGGCAAAACAAGGTCAGGGGCAGGTTTTGGTTTGTGCACCTAGCAATGTGGCTGTTGATCAGCTTGCTGAAAAGATAAGTTCTACTGGGTTGAAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGCTACAACAACTGAAAGACGAACAAGGTATTTGTGGTTCAAATCTGTACAAGCGGTTTTGCATTTTAGGGCTGAAGCCTATGGGACAAGAAGAAATAAGTGCAAGCGGCACATCTTATTTGAATAGAACTGAGGCTGCCAATGTTGAAAAAATTGTAACTACTTTCTTAAGAAGTGGTGTAGTTCCTAATCAGATTGGTGTGATAACACCTTACGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCCCTCCGGCAACAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCATGTGTAAGGAGTAATGAGCATCAGGGCATTGGGTTTCTCAATGATCCCCGTAGGCTCAATGTTGCTTTGACCAGAGCTAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTGTGGAATAGCTTGTTGACGCACTACAAGGAACATGAGTGCCTGGTTGAAGGGCCTTTAAATAATTTAAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGTCCTGGAGTTGCAGCCAGTGATAATTTTGGGTCAGTTGGCTCTGGCCCAACTTCTGAACGGAAGAGCAGCGGGGGCAGGGGATCTTATATGCCTCCTGGCCCATCAAACGGAACCCATAAGCCTGGTGTGCATCCATCTGGGTATCCCATTCCAAGGTTACCTCTGCCAACTTTTGGTGGTCCCCAATCTCAGCCATATGCTATTCCAACTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCACCTCCGGGCAGTCGGGGTTTTGGTGCGGGACGAGGTAATGCTGGTGCCACAGTTGGCAATCATCTCCCGCACCAGCAAGGCACACAACAGTCCCTGGGGAATCTTGGATCTACTTTCAACTTTCCAGCTCTGGAAAATCCCAACAGTCAGCCATCTGTTGGTGTTCCATTATCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGAGCAAGCCAGTCGCTTAGAGATCAGTTTTCTGTGCCAGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTACTGATTTCTCTACCCAGGCTTCTCAGAGTGGGTATGCTGTTGATTATGTTACACATGGAGCACAAGGTGGATTCCCTGGAAACGGTTTGAACCAGAATTCTCAAGCTGGATACTCACGTTTTGGTTCTGGAAATGATTTTATGTCTCAGGACTATATGGCCCATGGATCACAAGGCCTTTTCACTCAGGTTGGCTTCAATGATCCCTTGCAAGATGATGCGCCACAGAGCCAATTTGGCGTGGGCAATGCCAACCCTCTCCAGTCTCAGGGCTTGATGAATTCTCTCTACTCCCAACCTTTTGCTCACTACAACACGCAGCCGATGAACATGCAAGCTTCCCAGCCACAGCCTCAGCTGGGTCAGAGCTCCCAAAATCAGAAAATGCACTATAATGGTTGA 3339 0.4576 MNSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDSIRSPAAWPTPSDSLVDPMERGGGGEAGSDHQSDASHVSAAPGSATKNRSTGSGCSGNSQMVDTLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQSVASKYEDAYQYQNVFAPLIKLEADYDKVVTSIFVSFLLLSDYSSVNMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVKLVRYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVRNLDTSDKSELHKLQQLKDEQGICGSNLYKRFCILGLKPMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVAASDNFGSVGSGPTSERKSSGGRGSYMPPGPSNGTHKPGVHPSGYPIPRLPLPTFGGPQSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNAGATVGNHLPHQQGTQQSLGNLGSTFNFPALENPNSQPSVGVPLSQPGFANNMPVQGASQSLRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTHGAQGGFPGNGLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFNDPLQDDAPQSQFGVGNANPLQSQGLMNSLYSQPFAHYNTQPMNMQASQPQPQLGQSSQNQKMHYNG 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0473 1112 Pfam AAA domain 502 571 IPR041677 GO:0004386
Lele50g0473 1112 Pfam RNA helicase (UPF2 interacting domain) 134 283 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lele50g0473 1112 MobiDBLite consensus disorder prediction 800 814 - -
Lele50g0473 1112 Gene3D - 355 443 - -
Lele50g0473 1112 CDD ZBD_UPF1-like 135 253 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lele50g0473 1112 FunFam regulator of nonsense transcripts 1 homolog 355 443 - -
Lele50g0473 1112 Pfam RNA helicase UPF1, 1B domain 354 443 IPR040812 -
Lele50g0473 1112 MobiDBLite consensus disorder prediction 1088 1112 - -
Lele50g0473 1112 FunFam Regulator of nonsense transcripts 1 591 774 - -
Lele50g0473 1112 Pfam AAA domain 614 736 IPR041679 -
Lele50g0473 1112 MobiDBLite consensus disorder prediction 1 98 - -
Lele50g0473 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 759 IPR027417 -
Lele50g0473 1112 MobiDBLite consensus disorder prediction 796 840 - -
Lele50g0473 1112 CDD 1B_UPF1-like 355 442 IPR040812 -
Lele50g0473 1112 PANTHER DNA2/NAM7 HELICASE FAMILY 613 779 IPR045055 -
Lele50g0473 1112 MobiDBLite consensus disorder prediction 73 98 - -
Lele50g0473 1112 Gene3D - 570 774 IPR027417 -
Lele50g0473 1112 CDD SF1_C_Upf1 613 753 IPR041679 -
Lele50g0473 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 574 IPR027417 -
Lele50g0473 1112 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0473 Lele-ChrLele50 2728254 2739461 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0473 50 2728254 2739461 Lele50g0473 50 2728254 2739461 ECH
Lele50g0473 50 2728254 2739461 Lele51g0454 51 2636967 2649118 hybridization
Lele50g0473 50 2728254 2739461 Lele52g0468 52 2797882 2811022 hybridization