Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0439 ATGGACTCACAACAGAGCAATCTATTCGAGACCGCTTCGCAACCCGACACTGGCAACGACGCTTACACTTTCCTCGAATTTAACACTCAGGGGGAGGATTTCGACTACCCGGAGTTCCGTGACTCGATTAGGTCCCCAGCGGCTTGGCCAACTCCGTCCGATTCGCTGGTTGATCCCATGGAGCGGGGTGGTGGAGCGGGTTCTGATCATCAGTCCGATGCCTCGCCTATTTCAGCTGCTCCAGGAAGCGCCACTAAAAACCGGGCAACTGGGTCGGGCAGCAGCGGGAACAGCCAGATGGTTGACAACCTGGCTGCTGGGATGAGCGGGTTGAATTTTGAGGATACCGGTGATGATGACAATTATGAATTTGGTAAAGGAGATTTCACTGAACATGCTTGTCGATATTGTGGGGTATCGAACCCTGCATGTGTTGTGAGGTGTAATGTGCCTTCTTGTCGCAAATGGTTTTGTAACTCAAGGGGGAACACGTCGGGCTCACATATCGTAAATCACCTGGTTCGAGCAAAGCACAAGGAAGTCTGTCTTCACAAAGATAGTCCTTTGGGAGAGACAATTCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCCAAGACAGAAAGTGTAGTTGTCCTTTTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAAGATATGAATTGGGATCTCAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCCTGCAATGGCTTGTGAAGATTCCATCTGAACAGGAGCAGTTGAGAGCACGACAGATAAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTATGGAAAACCAATCCTGATGCTTCTCTTGAGGACCTTGAGAAACCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTAAAATATGAAGATGCATATCAGTATCAAAATGTTTTTGCTCCACTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTTACCATTCGATGGGATATTGGTCTTAATAAAAAACGCATTGCATACTTTGTTTTTCCAAAGGAAGATAATGAGTTGCGTCTTGTACCTGGTGATGAATTACGGTTGCGTTATTCTGGGGATGCTGCACATCCAGCATGGCAATCAGTGGGGCATGTGATTAAGTTAACTGCACAAGAGGAAGTTGCTCTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGATGTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACAAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCAGTGGATGAGACTAGTGTAAGCGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGCAATACATTGCCTCGTCGCTTTGGCGCTCCTGGGCTTCCAGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCGGCAATTGTATATCACATGGCAAAACAAGGTCAGGGGCAGGTTTTGGTTTGTGCACCTAGCAATGTGGCTGTTGATCAGCTTGCTGAAAAGATAAGTTCTACTGGGTTGAAGGTTGTTAGGCTCTGTGCAAAGTCAAGAGAAGCTGTGAGTTCTCCAGTTGAGCACTTAACTCTTCATTATCAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTTCACAAGCTACAACAACTGAAAGACGAACAAGGTGAACTTTCCAGTAGTGATGAGAAAAAGTACAAAGCATTAAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTTATCTGCTGCACATGTGTTGGCGCTGGAGATCCTCGGCTGGCAAATTTTAGGTTCCGTCAGGTACTCATTGATGAGTCTACTCAGGCTACAGAACCTGAATGTCTCATTCCTTTGGTGCTTGGGGTCAAGCAGGTTGTTCTTGTGGGTGATCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAGGCAGCTCGTGCAGGCCTTGCACAGTCACTTTTTGAACGACTTGTTCTGCTTGGTGTTAAACCAATTAGATTGCAGGTTCAATATCGTATGCATCCATCTCTCTCAGAATTCCCTTCAAATAGCTTTTATGAAGGCACTCTGCAAAATGGAGTTACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCCTGGCCAGTGCCCAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAAATAAGTGCAAGCGGCACATCTTATTTGAATAGAACTGAGGCTGCAAATGTTGAAAAAATTGTAACTACTTTCTTAAGAAGTGGTGTAGTTCCTAATCAGATTGGTGTGATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCCCTCCGGCAACAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCATGTGTAAGAAGTAATGAGCATCAGGGCATTGGGTTTCTGAATGATCCCCGTAGGCTCAATGTTGCTTTGACCAGAGCTAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTTAGCAAGCAGCCTCTGTGGAATGGCTTGTTGACGCACTACAAGGAACATGAGTGCCTGGTTGAAGGGCCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGTCCTGGAGTTGTGGCTGGTGATAATTTTGGGTCAGTTGGCTCTGGCCCAACTTCTGATCGGAAGAGCAGCAGGGGCAGGGGATCTTATATGCCTCCTGGCCCATCAAATGGAACCCATAAGCCTGGTGCGCATCCATCTGGGTATCCCATTCCAAGGGTACCTCTGCCACCTTTTGGTGGTCCCCAATCTCAGCCATATGCTATTCCAACTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTCCCTCATGTACCACCCCCAGGCAGTCGGGGTTTTGGTGCTGGACGAGGTAATTCTGGTGCCACAGTTGGCAATCATCTCCCACACCAGCAAGTCACGCAACAGTCCCTGGGGAATCTTGGATCTACTTTCAACTTTCCAGCTCTGGAAAATCCCAACAGTCAGCCATCTGTTGGTGTTCCATTGTCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGAGCAAGCCAGTCGTTTAGAGATCAGTTTTCTGTGCCAGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCACGTTGCTTATAACGTTACTGATTTCTCTACCCAGGCTTCTCAGAGTGGATATGCTGTCGATTATGTTACACAAGGAGCACAAGGTGGATTCCCTGGAAACTTTTTGAACCAGAATTCTCAAGCTGGATACTCACGTTTTGGTTCTGGAAATGATTTCATGTCTCAGGATTATATGACCCATGGATCACAAGGCCTTTTCACTCAGGTTGGCTTCAATGATCCCTTGCAAGATGATGCGCCACAGAGCCAATTTGGTGTGGGCAATGCCAACCCTCTCCAGTCTCAGGGCTTGATGAATTCTCTCTATTCCCAACCTTTTGCTCACTACAACACGCAGCCGATGAACATGCAGGCTTCCCAGCCACAGCCTCAGGGTCAGAGCTCCCAAAATCAGAAAATGCACTATAATGGTTGA 3798 0.4547 MDSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDSIRSPAAWPTPSDSLVDPMERGGGAGSDHQSDASPISAAPGSATKNRATGSGSSGNSQMVDNLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVAGDNFGSVGSGPTSDRKSSRGRGSYMPPGPSNGTHKPGAHPSGYPIPRVPLPPFGGPQSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNSGATVGNHLPHQQVTQQSLGNLGSTFNFPALENPNSQPSVGVPLSQPGFANNMPVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVAYNVTDFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDDAPQSQFGVGNANPLQSQGLMNSLYSQPFAHYNTQPMNMQASQPQPQGQSSQNQKMHYNG 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0439 1265 CDD 1B_UPF1-like 338 425 IPR040812 -
Lele49g0439 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 913 IPR027417 -
Lele49g0439 1265 PANTHER DNA2/NAM7 HELICASE FAMILY 236 987 IPR045055 -
Lele49g0439 1265 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Lele49g0439 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Lele49g0439 1265 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lele49g0439 1265 MobiDBLite consensus disorder prediction 951 1008 - -
Lele49g0439 1265 FunFam regulator of nonsense transcripts 1 homolog 338 426 - -
Lele49g0439 1265 Pfam AAA domain 581 685 IPR041677 GO:0004386
Lele49g0439 1265 MobiDBLite consensus disorder prediction 1 101 - -
Lele49g0439 1265 MobiDBLite consensus disorder prediction 1240 1265 - -
Lele49g0439 1265 CDD SF1_C_Upf1 718 907 IPR041679 -
Lele49g0439 1265 MobiDBLite consensus disorder prediction 71 101 - -
Lele49g0439 1265 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lele49g0439 1265 Gene3D - 446 716 IPR027417 -
Lele49g0439 1265 MobiDBLite consensus disorder prediction 991 1007 - -
Lele49g0439 1265 FunFam Regulator of nonsense transcripts 1 717 928 - -
Lele49g0439 1265 CDD DEXXQc_UPF1 482 717 - -
Lele49g0439 1265 Pfam Type III restriction enzyme, res subunit 488 552 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele49g0439 1265 Pfam AAA domain 695 890 IPR041679 -
Lele49g0439 1265 Gene3D - 338 426 - -
Lele49g0439 1265 Gene3D - 568 620 - -
Lele49g0439 1265 Gene3D - 717 928 IPR027417 -
Lele49g0439 1265 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0439 Lele-ChrLele49 2587055 2598975 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0439 49 2587055 2598975 Lele49g0439 49 2587055 2598975 ECH
Lele49g0439 49 2587055 2598975 Lele51g0454 51 2636967 2649118 hybridization
Lele49g0439 49 2587055 2598975 Lele52g0468 52 2797882 2811022 hybridization