Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0265 ATGGTATACGAATCGGAGCTCATCGGCCGGCTCCGGGAGTTTCTTCGCTGCTCCGACCTCAACACTACTACCACTGCTACGGTCCGCCGCCAGTTGGAGGAGGATTTTGGAATCGATTTATCGGATAGGAAGGCGTTCATTAGGGAACAGATCGACTTGTTCCTTCAAGGCGAGCGCGAGCAGCCCAAGGAACCTGAAGAACCGGAAGATGAAGAAGATAAAAAAGACGAGCCTCAGCCGGAGCATGAATCAGAAGAAAGCGAAGATTCTGATGATGAAATGCAAGACGATGAAGAAGGAGATGGAGTTAAAGTAAAGCGTTCCAGGAATGGGAAGGACAAAGGACGATCTAAAAATTCAGGAAGTGAGGTGCGAAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCAGGAATTCGTCAGAGCACCAGAAATGGCAAGGACTGAGGTTGTTAAGAAATTATGGGCCTATATAAGGGAGAAGAATTTGCAAGACGCAAATAACAGGCGGAATATTATTTGTGATGAACCATTACGGGCCCTTTTTGGTGTTGATTCCATCAACATGTTCCAAATGAATAAAGTATTGTCGAAGCATATCTGGCCATTGGATTCTGATGATGTCATCCAGGTGAAGTCTGCACCAAAGGAAAAACAGAAGCAGCAAGAGAGAGAAGATCCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTCAACTGTCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGTGCTGATGTGATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGTGATGAGAAGCTGAAAGAACTTTTCGATGTTGACTCCTTCAACGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 993 0.4381 MVYESELIGRLREFLRCSDLNTTTTATVRRQLEEDFGIDLSDRKAFIREQIDLFLQGEREQPKEPEEPEDEEDKKDEPQPEHESEESEDSDDEMQDDEEGDGVKVKRSRNGKDKGRSKNSGSEVRKKGGGFCKLCSLSPQLQEFVRAPEMARTEVVKKLWAYIREKNLQDANNRRNIICDEPLRALFGVDSINMFQMNKVLSKHIWPLDSDDVIQVKSAPKEKQKQQEREDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRADVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0265 330 ProSiteProfiles SWIB/MDM2 domain profile. 248 327 IPR003121 -
Lele52g0265 330 MobiDBLite consensus disorder prediction 218 245 - -
Lele52g0265 330 ProSiteProfiles SWIB/MDM2 domain profile. 130 207 IPR003121 -
Lele52g0265 330 MobiDBLite consensus disorder prediction 54 126 - -
Lele52g0265 330 SMART swib_2 131 210 IPR019835 -
Lele52g0265 330 SMART swib_2 249 330 IPR019835 -
Lele52g0265 330 Gene3D - 2 56 - -
Lele52g0265 330 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 210 - -
Lele52g0265 330 MobiDBLite consensus disorder prediction 218 248 - -
Lele52g0265 330 Pfam DEK C terminal domain 4 55 IPR014876 -
Lele52g0265 330 MobiDBLite consensus disorder prediction 99 123 - -
Lele52g0265 330 Gene3D SWIB/MDM2 domain 243 330 IPR036885 -
Lele52g0265 330 SUPERFAMILY SWIB/MDM2 domain 246 328 IPR036885 -
Lele52g0265 330 CDD SWIB-MDM2_like 253 325 - -
Lele52g0265 330 Gene3D SWIB/MDM2 domain 125 213 IPR036885 -
Lele52g0265 330 SUPERFAMILY DEK C-terminal domain 4 57 - -
Lele52g0265 330 FunFam Upstream activation factor subunit 125 213 - -
Lele52g0265 330 CDD SWIB-MDM2_like 135 205 - -
Lele52g0265 330 SUPERFAMILY SWIB/MDM2 domain 126 209 IPR036885 -
Lele52g0265 330 MobiDBLite consensus disorder prediction 82 98 - -
Lele52g0265 330 Pfam SWIB/MDM2 domain 134 205 IPR003121 -
Lele52g0265 330 Pfam SWIB/MDM2 domain 252 325 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0265 Lele-ChrLele52 1538404 1542867 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele52g0265 SWIB 2.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0247 49 1432063 1436493 Lele52g0265 52 1538404 1542867 hybridization
Lele50g0259 50 1503709 1508224 Lele52g0265 52 1538404 1542867 hybridization