Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0259 ATGGTATCCGAATCGGAGCTTATCGGGCGGCTCCGGGAGTTTCTTCTCTGCTCCGACCTCAACACTACTACCACAGCTACGGTCCGCCGCCAGTTGGAGGAGGATTTTGGAATCGATTTATCGGATAGGAAGGCGTTCATTAGGGAACAGGTCGACTTATTCCTTCAAGGCGAGCGCGAGCAGCCCGAGGAACCTGAAGAACCGGAAGATGAAGATCAAAAAGACGAGCATCAGCCGGAGCATAAATCAGAAGAAAGCGAAGATTCTGATGATAAAATGCAAGACGATAAAGAAGGAGATGAAGTTAAAGTAAAGCGTTCCAGGAATGGGAAGGACAAAGGACGATCTAAAAGTTCAGGAAGTGAGGTGCGAAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCAGAAATTCGTTGGAGCACCAGAAATGGCAAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATAAGGGAGAAGAATTTGCAAGACGCAAATAACAGGCGGAATATTATTTGTGATGAACCATTACGGGCCCTTTTTGGTGTTGATTCCATCAACATGTTCCAAATGAATAAAGTATTGTCGAATCATATCTGGCCATTGGATTCTGATGATGTCATCCAGGTGAAGTCTGCGCCAAAGGAAAAACAGAAGCAGCAAGAGAGAGAAGAAGATCCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTCCTTGCTCCTCTTCAACTGTCCGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGTGCTGCTGTGATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGTGATGAGAAGCTGAAAGAACTCTTCGATGTTGACTCCTTCAACGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 993 0.4391 MVSESELIGRLREFLLCSDLNTTTTATVRRQLEEDFGIDLSDRKAFIREQVDLFLQGEREQPEEPEEPEDEDQKDEHQPEHKSEESEDSDDKMQDDKEGDEVKVKRSRNGKDKGRSKSSGSEVRKKGGGFCKLCSLSPQLQKFVGAPEMARTEVVKQLWAYIREKNLQDANNRRNIICDEPLRALFGVDSINMFQMNKVLSNHIWPLDSDDVIQVKSAPKEKQKQQEREEDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRAAVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0259 330 MobiDBLite consensus disorder prediction 217 248 - -
Lele50g0259 330 SUPERFAMILY DEK C-terminal domain 3 57 - -
Lele50g0259 330 ProSiteProfiles SWIB/MDM2 domain profile. 129 206 IPR003121 -
Lele50g0259 330 SMART swib_2 249 330 IPR019835 -
Lele50g0259 330 SMART swib_2 130 209 IPR019835 -
Lele50g0259 330 Gene3D - 1 56 - -
Lele50g0259 330 MobiDBLite consensus disorder prediction 96 122 - -
Lele50g0259 330 Gene3D SWIB/MDM2 domain 243 330 IPR036885 -
Lele50g0259 330 Gene3D SWIB/MDM2 domain 124 212 IPR036885 -
Lele50g0259 330 MobiDBLite consensus disorder prediction 55 126 - -
Lele50g0259 330 FunFam Upstream activation factor subunit 124 212 - -
Lele50g0259 330 MobiDBLite consensus disorder prediction 74 88 - -
Lele50g0259 330 CDD SWIB-MDM2_like 134 204 - -
Lele50g0259 330 Pfam SWIB/MDM2 domain 252 325 IPR003121 -
Lele50g0259 330 Pfam SWIB/MDM2 domain 133 204 IPR003121 -
Lele50g0259 330 Pfam DEK C terminal domain 2 55 IPR014876 -
Lele50g0259 330 SUPERFAMILY SWIB/MDM2 domain 246 328 IPR036885 -
Lele50g0259 330 MobiDBLite consensus disorder prediction 217 245 - -
Lele50g0259 330 CDD SWIB-MDM2_like 253 325 - -
Lele50g0259 330 SUPERFAMILY SWIB/MDM2 domain 125 208 IPR036885 -
Lele50g0259 330 ProSiteProfiles SWIB/MDM2 domain profile. 248 327 IPR003121 -
Lele50g0259 330 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0259 Lele-ChrLele50 1503709 1508224 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele50g0259 SWIB 8.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0259 50 1503709 1508224 Lele51g0257 51 1458071 1462506 hybridization
Lele50g0259 50 1503709 1508224 Lele52g0265 52 1538404 1542867 hybridization