Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0247 ATGGTATCCGAATCGGAGCTTATCGGCCGGCTCCGGGAGTTTCTTCGCTGCTCCGACCTCAACACTACCACCACTGCCACGGTGCGCCGCCAGTTGGAGGAGGATTTTGGAATCGATTTATCGGATAGGAAGGCGTTCATTAGGGAACAGGTCGACTTGTTCCTTCAGAGCGAGCGCGATCAGCCCGAGGAACCGGAAGATGAAGAAGATAAAAAAGACGAGCCTCAGCCGGAGCGTGAATCAGAAGAAAACGAAGATTCGGATGGTGAAATGCAAGACGATGAAGGAGATGAAGTTAAAGTAAAGCGTTCCAGGAATGGGAAGGACAAAGGACGATCTAAAAGTTCAGGAAGTGAGGTGCGAAGAAAAGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCGGGAATTCGTTGGAGCACCAGAAATGGCAAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATAAGGAAGAAGAATTTGCAAGATCCAAATAACAGGCGGAATATAATTTGTGATGAACCATTACGGGCCCTTTTTGGTGTTGATTCCATCAACATGTTTCAAATGAATAAATCATTGTCCAAGCATATCTGGCCATTGGATTCTGAGGATGTCATCCAGGTGAAGTCTGCACCAAAAGAAAAGCAGAAGAAGCAAGAGAGAGAAGAAGTTCCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTCAACTGTCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGTGCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGTGATGAGAAGCTGAAAGAACTCTTCGGTGTTGACTCTTTCAACGGTTTCACAGTTTCGAAGCTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 981 0.4444 MVSESELIGRLREFLRCSDLNTTTTATVRRQLEEDFGIDLSDRKAFIREQVDLFLQSERDQPEEPEDEEDKKDEPQPERESEENEDSDGEMQDDEGDEVKVKRSRNGKDKGRSKSSGSEVRRKGGFCKLCSLSPQLREFVGAPEMARTEVVKQLWAYIRKKNLQDPNNRRNIICDEPLRALFGVDSINMFQMNKSLSKHIWPLDSEDVIQVKSAPKEKQKKQEREEVPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRADVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFGVDSFNGFTVSKLLAPHFIKAEQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0247 326 SUPERFAMILY SWIB/MDM2 domain 242 324 IPR036885 -
Lele49g0247 326 Pfam SWIB/MDM2 domain 129 200 IPR003121 -
Lele49g0247 326 Pfam SWIB/MDM2 domain 248 321 IPR003121 -
Lele49g0247 326 MobiDBLite consensus disorder prediction 54 121 - -
Lele49g0247 326 SUPERFAMILY DEK C-terminal domain 3 56 - -
Lele49g0247 326 MobiDBLite consensus disorder prediction 79 94 - -
Lele49g0247 326 FunFam Upstream activation factor subunit 120 208 - -
Lele49g0247 326 SUPERFAMILY SWIB/MDM2 domain 122 204 IPR036885 -
Lele49g0247 326 ProSiteProfiles SWIB/MDM2 domain profile. 125 202 IPR003121 -
Lele49g0247 326 MobiDBLite consensus disorder prediction 212 241 - -
Lele49g0247 326 Gene3D SWIB/MDM2 domain 239 326 IPR036885 -
Lele49g0247 326 ProSiteProfiles SWIB/MDM2 domain profile. 244 323 IPR003121 -
Lele49g0247 326 MobiDBLite consensus disorder prediction 212 244 - -
Lele49g0247 326 Gene3D SWIB/MDM2 domain 120 208 IPR036885 -
Lele49g0247 326 MobiDBLite consensus disorder prediction 95 121 - -
Lele49g0247 326 CDD SWIB-MDM2_like 130 200 - -
Lele49g0247 326 Gene3D - 1 58 - -
Lele49g0247 326 CDD SWIB-MDM2_like 249 321 - -
Lele49g0247 326 Pfam DEK C terminal domain 2 55 IPR014876 -
Lele49g0247 326 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 206 - -
Lele49g0247 326 SMART swib_2 126 205 IPR019835 -
Lele49g0247 326 SMART swib_2 245 326 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0247 Lele-ChrLele49 1432063 1436493 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele49g0247 SWIB 1.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0247 49 1432063 1436493 Lele51g0257 51 1458071 1462506 hybridization
Lele49g0247 49 1432063 1436493 Lele52g0265 52 1538404 1542867 hybridization