Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0192 ATGCAGATTATTGATGTCGCGTCGATACTTGGGCTGGACTACGATATCTCAGACCATGCGTTTCAATTATTCAGGGATTGTTGCTCGGCTACTTGTTTGAGAAACCGGAGCGTCGAAGCGCTTGCAAGTGCTGCTCTTGTTCAGGCAATTAGAGAGGCTCAGGAACCCAGAACCCTTCAGGTTTGGTTATTCTGTTCAAATTTTGCATTTATGTTGTTGTATTTGTTTACCTCTGCCTTTGACTGCCAAGGAAGCCGAAATCTGGGGTGTGTTGGAGGATCTGAGACTTTGGAGTTCGTGTGTGTGGAAGTAGAACTAGATGTGCTGGCCACAGAAATTTCAATTGCGGCCAATGTGCCACAAAAGGAAATTGGGAAATACATCAAAATACTAGGAGAGGCTTTGCAGCTCAGTCAGCCTATTAATAGCAATTCTATTTCAGTCCATATGCCTAGATTTTGTACCCTTCTACAACTCAATAAATCTGCTCAGTTCGACAAAGTGGGGATTTGGGCAGAGTTTGAACTGGCCACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCTATTAGCATTTCTGCTGCTGCTATATACCTGGCTTGCCAACTCGAAGACAAACGCAAAACCCAGGCAGAAATCTGCAAGGTGACTGGTCTTACTGAAGTAACTCTTCGTAAAGTGTACAAGGAACTTCTAGAGAATTGGGATGATTTGCTTCCCTCTAATTATACACCAGCTGTTCCTCCTGAGAGGGCATTCCCAACTACTGTAATTGCTTCAGGTCGTTCATCAGCAACTAAGGTTGATGCAATAGAGGTTAATTCTTCTTTAGACAGAGATAAGCTAATAGAAATCAAACCTAGCAAACCAAATGAGGTTCCAGTCATGGTACATCAGCTCAGGGGGAAAGATGACGTTGAAAGTAAGAGCAATGCTAGCGTGACCCACTCGGCACTGAATCAGCAGTCAGCTTTCTGGCAATCCCAACTTCCTATTGGGGCATGTAATCATAAAACGACAGGAGAAAAAAGTCGAAATGTCTTGCAAGGAATGGACGTAGAGGGACTGCAGCTTAACCACCTACAGCCTGAACAGAAGTCTGAAGACACAAATGGAACTGCGATCCACGTGGAAAAACGTGTTCTTTTGGGAACAGAAAACGTAGAGAAGAGGAATGGCTTTTGTTCTTGTGGTGTATAAACCCTAGACCCGAACCGCGAGTCCGTTGCCCCAGAGGTTTATCCCGACTCTTCTCCCTTTGCCAATAGAAGAAAGGGAGAGAAATTCAAGAGAGAGAGAGAGAGAGAAGGTCTGGCTATGCGAATTATTGTGTTTCTTCGACTATTTGAATTTTCATCGTAG 1380 0.4428 MQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVEALASAALVQAIREAQEPRTLQVWLFCSNFAFMLLYLFTSAFDCQGSRNLGCVGGSETLEFVCVEVELDVLATEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQFDKVGIWAEFELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSATKVDAIEVNSSLDRDKLIEIKPSKPNEVPVMVHQLRGKDDVESKSNASVTHSALNQQSAFWQSQLPIGACNHKTTGEKSRNVLQGMDVEGLQLNHLQPEQKSEDTNGTAIHVEKRVLLGTENVEKRNGFCSCGVXTLDPNRESVAPEVYPDSSPFANRRKGEKFKREREREGLAMRIIVFLRLFEFSS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0192 459 Pfam Transcription factor TFIIB repeat 148 239 IPR013150 GO:0017025
Lele52g0192 459 SMART cyclin_7 148 239 IPR013763 -
Lele52g0192 459 SMART cyclin_7 1 110 IPR013763 -
Lele52g0192 459 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 295 IPR000812 GO:0006352|GO:0070897
Lele52g0192 459 Gene3D - 1 139 - -
Lele52g0192 459 SUPERFAMILY Cyclin-like 146 254 IPR036915 -
Lele52g0192 459 SUPERFAMILY Cyclin-like 3 63 IPR036915 -
Lele52g0192 459 CDD CYCLIN 3 69 IPR013763 -
Lele52g0192 459 Gene3D - 148 254 - -
Lele52g0192 459 CDD CYCLIN 150 238 IPR013763 -
Lele52g0192 459 FunFam Transcription initiation factor IIB 148 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0192 Lele-ChrLele52 1135972 1140302 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0173 49 1054869 1058427 Lele52g0192 52 1135972 1140302 hybridization
Lele50g0192 50 1129360 1133622 Lele52g0192 52 1135972 1140302 hybridization