Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0173 ATGAAGTGCCCGTACTGTGCGGCGACTCAAGGTCGTAGCGCCACCACCAGCTCCGCTCGCTCCATAACGGAGTGCACATCCTGCGGCCGAGTTGTTGAAGAGCGACAGTCCCACCCTCACCATCTCTTCCACCTCCGCGCACAAGACAATCCTCTCTGTCTCGTCACTCCCGACCTCCCCTCCCTCCAACCCTTTAATCAAAGCCAAGACGACGATGACCCCTTCGAGCCCACCGGCTTCATCACTGCATTTTCCACTTGGTCCCTTGAGTCCAGCCCTCTCTACCTCCAGTCCTGTCTTTCATTCTCTGGTCACCTCGCAGAGCTTGAGAGGGCTCTTGAATCGTCCTCGTCTTCATCCTCCTCTTCGACACCATCGTCTTCAACTTCGTCGACGGTTGTGGTTGATAATTTGAGGGCGTACATGCAGATTATTGATGTCGCGTCGATACTTGGGCTGGACTACGATATCTCAGATCATGCGTTTCAATTATTCAGGGATTGTTGTTCGGCTACTTGTTTGAGAAACCGGAGCGTCGAAGCGCTTGCCACTGCTGCTCTTGTTCAGGCAATTAGAGAGGCTCAGGAACCCAGAACCCTTCAGGAAATTTCAATTGCGGCCAATGTGCCACAAAAGGAGATTGGGAAATACATCAAGATACTAGGAGAGGCTTTGCAGCTCAGTCAGCCCATTAATAGCAATTCTATTTCAGTCCATATGCCTAGATTTTGTACCCTTCTACAACTCAATAAATCTGCTCAGGAACTGGCCACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACCCGCAGGAATCCTATTAGCATTTCGGCTGCTGCTATATACCTGGCTTGCCAACTGGAAGACAAACGCAAAACCCAGGCAGAAATCTGCAAGGTGACTGGTCTTACTGAAGTAACTCTTCGTAAAGTGTACAAGGAACTTCTAGAGAATTGGGATGATTTGCTTCCCTCTAATTATACACCAGCTGTTCCTCCTGAGAGGGCCTTCCCTACTACTGTAATTGCTTCAGGTCGTTCATCAACAACTAAGGTTGAGGCAATAGAGGTTAATTCTTTAGACAGAGACAAGCTACTAGAAATAAAACCTAGCAAACCAAATGAGGTTCCAGTCATGGTACATCAGCTCAGGGGGAAAGATGATGTTGAAAGTAAGAGCAATGCTAGCGTGACCCACTCGGCACTGAATCAGCAGTCAGCTTTCTGGCAATCCCAGCTTCCTATTGGAGCGTGTAATCATAAAACGACAGGAGAAAAAAGTCGAAATGTCTTGCAAGGAATGGACGTAGAGGGACTGCAGCATAATCACCTACAGCCTGAACAGAAGTCTGAAGACACAAATGGTAATATTAATCCTTTTCAAAAACCCAACCATCTTAGCAGTCCTTCTGCGTCGTCTGCTAGCCCTGTTATGAAACCCTCTTCGGCTACCCCTCCAAATGTTTGA 1473 0.4807 MKCPYCAATQGRSATTSSARSITECTSCGRVVEERQSHPHHLFHLRAQDNPLCLVTPDLPSLQPFNQSQDDDDPFEPTGFITAFSTWSLESSPLYLQSCLSFSGHLAELERALESSSSSSSSSTPSSSTSSTVVVDNLRAYMQIIDVASILGLDYDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSSTTKVEAIEVNSLDRDKLLEIKPSKPNEVPVMVHQLRGKDDVESKSNASVTHSALNQQSAFWQSQLPIGACNHKTTGEKSRNVLQGMDVEGLQHNHLQPEQKSEDTNGNINPFQKPNHLSSPSASSASPVMKPSSATPPNV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0173 490 FunFam Transcription initiation factor IIB 238 335 - -
Lele49g0173 490 Pfam Transcription factor TFIIB repeat 238 319 IPR013150 GO:0017025
Lele49g0173 490 Pfam Transcription factor TFIIB repeat 140 221 IPR013150 GO:0017025
Lele49g0173 490 Gene3D - 238 334 - -
Lele49g0173 490 SUPERFAMILY Cyclin-like 139 229 IPR036915 -
Lele49g0173 490 SUPERFAMILY Cyclin-like 236 334 IPR036915 -
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 305 319 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 273 289 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 184 203 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 210 225 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PRINTS Transcription initiation factor IIB signature 239 257 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 357 IPR000812 GO:0006352|GO:0070897
Lele49g0173 490 FunFam Transcription initiation factor TFIIB 138 229 - -
Lele49g0173 490 MobiDBLite consensus disorder prediction 451 484 - -
Lele49g0173 490 CDD CYCLIN 240 318 IPR013763 -
Lele49g0173 490 Gene3D - 138 229 - -
Lele49g0173 490 CDD CYCLIN 140 221 IPR013763 -
Lele49g0173 490 SMART cyclin_7 238 319 IPR013763 -
Lele49g0173 490 SMART cyclin_7 142 223 IPR013763 -
Lele49g0173 490 MobiDBLite consensus disorder prediction 446 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0173 Lele-ChrLele49 1054869 1058427 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0173 49 1054869 1058427 Lele51g0190 51 1080432 1084016 hybridization
Lele49g0173 49 1054869 1058427 Lele52g0192 52 1135972 1140302 hybridization