Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0170 ATGACTGCTACAAGATTATCATCGTGCGTAGCCATGGCTGCAGCCGTGGCTGCTACGTCCGCTCTCTCCAATAAGGCTTACGCCGAGACCTCCTTTCGGTTCCCTCTTTTCTCTCCTTCTTCGTCTACTCCAGCTCCTCAGGTTTTTGATTTGATGAGACAGCAGGAACAAACTCGCCTTGCTGAGTTAGATGCCGAAAAAGTTCATTATGAACTGATCCAGTCTCAAGTTGATATTGATAGGCAGCGGAAATTAGCTGAAGAACAACGGAATCTTATACAGGAGCAGGCTCAGAGGCAGGCCCAGGTGATGCGTTATGAGGATGAACTGGCTAGGAAAAGGATGCAGGTTTGGGCAGATCATGAAGCTCAGAGACGACATAATGTTGAATTGGTGAAGATGCAAGAGGAGTCCTCTGTTAGAAAGGAACAGGCAAGGCGAGCTACTGAAGAACAGATTCAAGCTCAGCAGCGTCAAACTGATAGAGAGAGAGCTGAAATAGAAAGGGAAACCATAAGAGTTAAGGCCATGGCAGAGGCAGAGGGTCGGGCCCATGAAGCGAAACTCACTGAGGAGCATAATAGTAGAATGCTTAGAGACCGGATGCAGGGTGAAAAAGAAAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATTGAAGGTGGTTTAAGGGTCTTATTGACTGATAGGGACAAATTGCTTATGACTGTGGGAGGGGCCACAGCATTAGCTGCGGGAGTATATACAACTAGAGAAGGTGCTAAAGTGACATGGGGCTACATTAATCGGATTTTGGGCCAGCCATCATTGATCCGGGAATCATCCATTGCAAAATTTCCGGGGTCAAGGATCATATCTCAAGCCAAAAGTAAAGCTTTAAGTTATAGTACTATGGCCAAGGCAGAAAAAGTTTCTGAGAGTAGAACTGGCCTTGAAAATGTAGTACTCCATCCTTCACTGCAGAGAAGAATAGAGCATCTAGCACGGGCTACATCAAATACCAAGGCTCACCAGGCACCATTCCGTAATATGCTTTTTTATGGCCCTCCTGGGACTGGTAAAACCATGGGTTTAGATTATGCCATGATGACTGGAGGTGATGTTGCACCCCTGGGCCCACAGGCTGTTACCAAAATCCATGAGATATTTGATTGGGCCAAGAAATCTAGAAAAGGCTTGCTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGGAACAGCACCCATATGAGCGAAGCTCAACGAAGTGCTCTAAACGCATTGCTCTTCAGAACGGGCGATCAGTCAAGAGACATAGTACTTGTCCTTGCCACAAACAGACCGGGTGATCTTGACAGTGCAGTGACTGACCGCATTGATGAGGTGATTGAATTCCCACTTCCTGGGGAGGAAGAACGTTTCAAATTGTTGAAGCTCTATTTGAACAAATACCTGAGCGAAGACAATGGCAGCTCATCCATACTCAGGAAACAAGCTCAAAAAATTATCACGAAGGATATATCCGAGGATGTGCTCAGGGAGGCTGCAAAGAAAACGGAGGGATTCTCAGGTCGCGAGGTAGCCAAATTGGTTTCCGGCATTCGAGCAGCCGTGTATGGACGCCCAGACTGTACTTTGGATTCTCAGTTGTTTATAGAAATGGTAGATTACAAGGTTGGGGAACATCATCAACGTGTAAAACTGGCGGCTGAAGGGGGTCTTCCTGACAATATCTAG 1725 0.4626 MTATRLSSCVAMAAAVAATSALSNKAYAETSFRFPLFSPSSSTPAPQVFDLMRQQEQTRLAELDAEKVHYELIQSQVDIDRQRKLAEEQRNLIQEQAQRQAQVMRYEDELARKRMQVWADHEAQRRHNVELVKMQEESSVRKEQARRATEEQIQAQQRQTDRERAEIERETIRVKAMAEAEGRAHEAKLTEEHNSRMLRDRMQGEKEKWLAAINTTFSHIEGGLRVLLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSIAKFPGSRIISQAKSKALSYSTMAKAEKVSESRTGLENVVLHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSTHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERFKLLKLYLNKYLSEDNGSSSILRKQAQKIITKDISEDVLREAAKKTEGFSGREVAKLVSGIRAAVYGRPDCTLDSQLFIEMVDYKVGEHHQRVKLAAEGGLPDNI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0170 574 Pfam ATPase family AAA domain-containing protein 3, N-terminal 41 273 IPR021911 -
Lele52g0170 574 Pfam ATPase family associated with various cellular activities (AAA) 345 463 IPR003959 GO:0005524|GO:0016887
Lele52g0170 574 Gene3D - 378 463 IPR027417 -
Lele52g0170 574 SMART AAA_5 341 465 IPR003593 -
Lele52g0170 574 MobiDBLite consensus disorder prediction 134 149 - -
Lele52g0170 574 Coils Coil 79 99 - -
Lele52g0170 574 ProSitePatterns AAA-protein family signature. 435 454 IPR003960 GO:0005524|GO:0016887
Lele52g0170 574 Coils Coil 139 170 - -
Lele52g0170 574 FunFam ATPase family AAA domain-containing protein 3 299 480 - -
Lele52g0170 574 Gene3D - 282 358 IPR027417 -
Lele52g0170 574 MobiDBLite consensus disorder prediction 134 165 - -
Lele52g0170 574 Gene3D - 464 529 - -
Lele52g0170 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 553 IPR027417 -
Lele52g0170 574 CDD AAA 337 463 - -
Lele52g0170 574 PANTHER PUTATIVE ATP-ASE 41 567 IPR039188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0170 Lele-ChrLele52 1009104 1013593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0170 321 536 Miscellaneous Gene Families AT5G53170 28.936 3.35e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0152 49 912149 917262 Lele52g0170 52 1009104 1013593 hybridization
Lele50g0171 50 1004119 1005178 Lele52g0170 52 1009104 1013593 hybridization