Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0152 ATGACTGCTGCAAGATTGTCATCGTGCGTAGCCATGGCTGCAGCCGTGGCTGCCGCGTCCGCTCTCTCCAATAAGGCTTATGCCGAGTCCTCCTTTCGTTTCCCTTTTTTCTCTCCTTCGTCGTCTACTCCAGCTCCTCAGGTAGATCAGAATTCTGATACTAAGTCAGAATCTCAAGCTGTCGATGAACCCAATAAGTCAGGTTTTGATCCGGAATCGTTAGAACGAGGAGCGAAAGCTCTCCGCGAAATCAATTCTTCTCGGTATTCTAAACAGGTTTTTGATTTGATGAGAAAGCAGGAACAAACTCGCCTTGCCGAATTAGATGCCGAGAAAGTTCATTATGAACTAATTCAGTCTCAAGTTGATATTGATAGGCAGCGGAAATTAGCTGAAGAACAACGGAATCTTATACAGGAGCAGGCTCAGAGGCAGGCCCAGGTGATGCGATATGAGGATGAACTGGCTAGGAAAAGAATGCAGGCAGATCACGAAGCTCAGAGACGACATAATGTTGAATTGGTGAAGATGCAAGAGGAGTCCTCTGTTAGAAAGGAACAGGCAAGGCGAGCTACTGAAGAACAGATTCAAGCTCAGCAGCGTCAAACTGAGAGAGAAAGAGCTGAAATAGAAAGGGAAACCATAAGAGTTAGGGCCATGGCGGAGGCAGAGGGTCGAGCCCATGAAGCAAAACTCACCGAGGAGAATAATAGTAGAATGCTGAGAGACCGGATGCAGGGTGAAAAAGAAAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATTGAAGGTGGCTTAAGGGTCTTATTGACTGATAGGGACAAATTGCTTATGACAGTGGGAGGGGCCACAGCATTAGCTGCAGGAGTATATACGACTAGAGAAGGTGCCAAAGTGACATGGGGCTACGTTAATCGGATTTTGGGTCAGCCATCATTGATCCGGGAATCATCCATTGCAAAATTTCCGGGGTCAAGGATCATATCTCAAGCCAAAAATAAAGCTTTAAGTTATAGTACTATGGCCAAGACAGAAAAAATTTCTGAGAGTAAAACTGGCCTTGAAAATGTAGTACTCCATCCTTCACTGCAGAGAAGAATAGAGCATCTTGCCCGGGCTACATCAAATACCAAGGCCCACCAGGCACCATTCCGTAACATGCTATTTTATGGCCCTCCCGGGACTGGTAAAACCATGGTTGCAAGGGAAATTGCTAAAAAATCGGGTTTAGATTATGCCATGATGACTGGAGGAGATGTTGCGCCCCTGGGCCCACAGGCTGTTACCAAAATCCATGAGATATTTGATTGGGCCAAGAAATCTAGAAAAGGCTTGCTGCTTTTTATTGACGAGGCAGATGCTTTCCTTTGCGAGCGGAACAGCACCCATATGAGCGAAGCTCAACGAAGTGCTCTAAACGCATTGCTGTTCAGAACCGGAGATCAGTCAAGAGACATAGTACTTGTCCTTGCCACAAACAGACCGGGTGATCTTGACAGCGCAGTGACTGATCGCATTGATGAGGTGATTGAATTCCCACTTCCTGGGGAGGAAGAACGTTTCAAATTGTTGAAGCTCTATTTGAACAAATACCTGAGCGAAGACAATGGCAGCTCATCCATACTCAGGAAACGAGCTCAAAAAATTATCATGAAGGATATATCCGAGGATATGCTCAGGGAGGCTGCAAAGAAAACGGAGGGATTCTCGGGTCGCGAGATAGCCAAATTGGTTTCCGGCATCCGAGCAGCCGTGTATGGACGCCCAGACTGTACTTTGGATTCTCACTTGTTCAGAGAAATAGTAGATTACAAGGTTGGGGAACATCATCAACGTATAAAACTGGCGGCTGAAGGCGGTCTTCCTGACAATGTCTAG 1881 0.4609 MTAARLSSCVAMAAAVAAASALSNKAYAESSFRFPFFSPSSSTPAPQVDQNSDTKSESQAVDEPNKSGFDPESLERGAKALREINSSRYSKQVFDLMRKQEQTRLAELDAEKVHYELIQSQVDIDRQRKLAEEQRNLIQEQAQRQAQVMRYEDELARKRMQADHEAQRRHNVELVKMQEESSVRKEQARRATEEQIQAQQRQTERERAEIERETIRVRAMAEAEGRAHEAKLTEENNSRMLRDRMQGEKEKWLAAINTTFSHIEGGLRVLLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYVNRILGQPSLIRESSIAKFPGSRIISQAKNKALSYSTMAKTEKISESKTGLENVVLHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIAKKSGLDYAMMTGGDVAPLGPQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSTHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERFKLLKLYLNKYLSEDNGSSSILRKRAQKIIMKDISEDMLREAAKKTEGFSGREIAKLVSGIRAAVYGRPDCTLDSHLFREIVDYKVGEHHQRIKLAAEGGLPDNV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0152 626 Pfam ATPase family AAA domain-containing protein 3, N-terminal 50 316 IPR021911 -
Lele49g0152 626 Pfam ATPase family associated with various cellular activities (AAA) 388 515 IPR003959 GO:0005524|GO:0016887
Lele49g0152 626 ProSitePatterns AAA-protein family signature. 487 506 IPR003960 GO:0005524|GO:0016887
Lele49g0152 626 Coils Coil 182 216 - -
Lele49g0152 626 MobiDBLite consensus disorder prediction 162 192 - -
Lele49g0152 626 SMART AAA_5 384 517 IPR003593 -
Lele49g0152 626 MobiDBLite consensus disorder prediction 39 73 - -
Lele49g0152 626 Gene3D - 329 533 IPR027417 -
Lele49g0152 626 CDD AAA 380 515 - -
Lele49g0152 626 Coils Coil 124 144 - -
Lele49g0152 626 PANTHER PUTATIVE ATP-ASE 19 619 IPR039188 -
Lele49g0152 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 605 IPR027417 -
Lele49g0152 626 MobiDBLite consensus disorder prediction 39 63 - -
Lele49g0152 626 MobiDBLite consensus disorder prediction 162 193 - -
Lele49g0152 626 FunFam ATPase family AAA domain-containing protein 3 342 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0152 Lele-ChrLele49 912149 917262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele49g0152 364 588 Miscellaneous Gene Families AT5G53170 29.915 7.85e-15 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0152 49 912149 917262 Lele51g0164 51 940371 945487 hybridization
Lele49g0152 49 912149 917262 Lele52g0170 52 1009104 1013593 hybridization