Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0039 ATGCCGGGAGGGAATGTGGGGGCAGAACATGCGGTGTTCGAGCAAGGAGCTTCGGCAGGGAATGTAGGGAATGAGAAGCTGGTGGAGCAGAAGACGGCGAACCCGGTGGCGCTGCTGCTGTCGTCGGCGATGATGCTGCGGCATCTGCAGTTTCCGGCGTTTGCGGACCGATTGGAGAGTGCGGTGAAAGCAGTCATACTGGAGGTCCAGCACCACCCAAGACATTGTGGATGCCGTCATAGCGGCCTTAGGCTGAACAACTCATCTCTCTCGTTTGTATATTCGTCCATCTTTCATATTATAACAGAATTTGAACGTAAAGCAGCATTCTTCATTCAACCTTCATCTGAGGAGAACAAATAA 363 0.5207 MPGGNVGAEHAVFEQGASAGNVGNEKLVEQKTANPVALLLSSAMMLRHLQFPAFADRLESAVKAVILEVQHHPRHCGCRHSGLRLNNSSLSFVYSSIFHIITEFERKAAFFIQPSSEENK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0039 120 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 74 - -
Lele52g0039 120 Gene3D Isopropylmalate Dehydrogenase 1 83 - -
Lele52g0039 120 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 1 68 - -
Lele52g0039 120 Pfam Isocitrate/isopropylmalate dehydrogenase 1 68 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0039 Lele-ChrLele52 268147 268662 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1258 53 21160021 21160902 Lele52g0039 52 268147 268662 CCT
Lele54g1231 54 17772875 17773750 Lele52g0039 52 268147 268662 CCT
Lele49g0034 49 234502 236310 Lele52g0039 52 268147 268662 hybridization
Lele50g0038 50 273791 275556 Lele52g0039 52 268147 268662 hybridization