Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0038 ATGGCGAGAAGATGCGCACCACTCCTGAAACAGATCTTCGCTGGATCACAACCGCCAGAGTCTCCAACCATCCTGGCCTCATGCTCCAGCAGATTCAACCCCAAGCGATCCATCACGTACATGCCCCGGCCCGGTGATGGGTCTACACGCACCATTACCCTTATACCGGGAGATGGCATAGGGCCTCTGGTCACCGGCGCCGTCGAGCAAGTGATGGAGGCTATGCACGCGCCCCTGCGGTTCGAGAAATATGAAGTACGAGGGAACATGAAGAGAGTGCCAGAGGAGGTGATCGATTCGATCAAGAAGAACAAAGTGTGCTTGAAGGGCGGTTTGGCTACGCCTACCCGGGGGGGGGGGGGGCTGTCCACAAGGCATCAGAATGTCGATATCGTCGTGATTAGGGAGAACACCGAGGGCGAGTACGCCGGTTTGGAGCATGAGGTTGTCCCCGGCGTCGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAGATATGCTTTCGACTATGCTTACCTGAATAAAAGAAAGAAGGTGACCGCTGTGCACAAAGCGAACATCATGAAGCTCGCAGACGGTTTGTTTTTGGAATACTGTAGGGAGGTCGCCAGACATTATCCTGGAATCCAATCATGCAACTTGTTTCCAAACGCGAACAGTTTGATTTCATGTGGCGAACACAGCAGCAGGCACGCTGGAGGGACGGGAGTGATGCCGGGAGGGAACGTGGGGGTAGAACATGCGGGGTTCGAGCAAGGAGCTTCGGCAGGAAATGTAGGGAATGAGAAGCTGGTTGAGCAGAAGATGGCGAACCCGGTGGCGCTGCTGCTGCCGTCGGCGATGATGCTGCGGCATCTGCAGTTTCCAGCGTTTGCGGACCGATTGGAGAGTGCAGTGAAAGCAGTCATACTGGAGGGGCAGCACCGGTCTAAAGACCTGGGAGGGTCCAGCACCACCCAAGACATTGTGGATGCCGTCATAGCGGCCTTAGGCTGA 1011 0.5539 MARRCAPLLKQIFAGSQPPESPTILASCSSRFNPKRSITYMPRPGDGSTRTITLIPGDGIGPLVTGAVEQVMEAMHAPLRFEKYEVRGNMKRVPEEVIDSIKKNKVCLKGGLATPTRGGGGLSTRHQNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIARYAFDYAYLNKRKKVTAVHKANIMKLADGLFLEYCREVARHYPGIQSCNLFPNANSLISCGEHSSRHAGGTGVMPGGNVGVEHAGFEQGASAGNVGNEKLVEQKMANPVALLLPSAMMLRHLQFPAFADRLESAVKAVILEGQHRSKDLGGSSTTQDIVDAVIAALG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0038 336 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 48 335 - -
Lele50g0038 336 Gene3D Isopropylmalate Dehydrogenase 121 222 - -
Lele50g0038 336 Gene3D Isopropylmalate Dehydrogenase 232 336 - -
Lele50g0038 336 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 236 334 - -
Lele50g0038 336 Gene3D Isopropylmalate Dehydrogenase 40 120 - -
Lele50g0038 336 Pfam Isocitrate/isopropylmalate dehydrogenase 51 117 IPR024084 -
Lele50g0038 336 Pfam Isocitrate/isopropylmalate dehydrogenase 234 331 IPR024084 -
Lele50g0038 336 Pfam Isocitrate/isopropylmalate dehydrogenase 126 215 IPR024084 -
Lele50g0038 336 SMART Iso_dh_2 51 331 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0038 Lele-ChrLele50 273791 275556 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1258 53 21160021 21160902 Lele50g0038 50 273791 275556 CCT
Lele54g1231 54 17772875 17773750 Lele50g0038 50 273791 275556 CCT
Lele50g0038 50 273791 275556 Lele51g0034 51 241898 243719 hybridization
Lele50g0038 50 273791 275556 Lele52g0039 52 268147 268662 hybridization