Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0034 ATGGCGAGAAGATGCGCACCGCTCCTTGAACAAATCCTCACCAGATATCAATCGTCGTCATGCTCCAGCAGAATCAACCCCAAGCGATCCATCACGTACATGCCCCGGCCCGGTGATGGGTCTACACGTGCCGTTACCCTTATACCTGGAGATGGCATAGGGCCTCTGGTAACCGGCGCCGTCGAGCAAGTGATGGAGGCGATGCACGCACCCCTGCAGTTCGAGAAATATGAAGTGCGAGGGGACATGAAGAGGGTGCCACAGGAAGTGATCGATTCGATCAAGAGGAACAAAGTGTGCTTGAAGGGCGGTTTGGCTACGCCTATGGGGGGAGGAGTGAGCTCGTTGAACGTGCAGCTAAGGAGAGAGCTTGATCTGTACGCTTCGCTCGTGAATTGTTTCAATCTTCCAGGGCTGACCACAAGGCATCAGAATGTCGATATCGTCGTGATTAGGGAGAACACCGAGGGCGAGTACGCCGGTTTGGAGCACGAGGTCGTCCCCGGCGTTGTCGAAAGCCTCAAGGTGACGCCGAATCTGTATGGGAACCTAGTGGCGAACACTGCGGCAGGCATAGCAGGAGGCACAGGAGTGATGCCGGGAGGGAATGTTGGGGCAGATCATGCGGTGTTTGAACAAGGGGCTTCGGCAGGGAATGTTGGGAATGAGATGCTGGTGGAGCAGAAGATGGCGAACCCGGTGGCGCTGCTGCTGTCATCGGCGATGATGCTGCGGCATCTGCAGTTCCCGGCGTTTGCGGACCGATTGGAGAGTGCTGTGAAAGCAGTGATACTGGAGGGGCAGCACCGCTCTAAAGACCTGGGAGGTTCCAGCACCACCCAAGACATTGTTGATGCCGTCATAGCTGCCTTAGACTGA 879 0.5643 MARRCAPLLEQILTRYQSSSCSSRINPKRSITYMPRPGDGSTRAVTLIPGDGIGPLVTGAVEQVMEAMHAPLQFEKYEVRGDMKRVPQEVIDSIKRNKVCLKGGLATPMGGGVSSLNVQLRRELDLYASLVNCFNLPGLTTRHQNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEMLVEQKMANPVALLLSSAMMLRHLQFPAFADRLESAVKAVILEGQHRSKDLGGSSTTQDIVDAVIAALD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0034 292 Gene3D Isopropylmalate Dehydrogenase 32 176 - -
Lele49g0034 292 Gene3D Isopropylmalate Dehydrogenase 177 292 - -
Lele49g0034 292 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 27 176 - -
Lele49g0034 292 SMART Iso_dh_2 44 287 IPR024084 -
Lele49g0034 292 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 42 291 - -
Lele49g0034 292 Pfam Isocitrate/isopropylmalate dehydrogenase 45 166 IPR024084 -
Lele49g0034 292 Pfam Isocitrate/isopropylmalate dehydrogenase 175 287 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0034 Lele-ChrLele49 234502 236310 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g1258 53 21160021 21160902 Lele49g0034 49 234502 236310 CCT
Lele54g1231 54 17772875 17773750 Lele49g0034 49 234502 236310 CCT
Lele49g0034 49 234502 236310 Lele51g0034 51 241898 243719 hybridization
Lele49g0034 49 234502 236310 Lele52g0039 52 268147 268662 hybridization