Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0025 ATGCAATCGTGGGAGCGAGGAAGGCGCTCTGGCTGCTGCCACCTGAGCGTCAAAGGAAAGAATAGGAGCAATGAGAGTCTGACGCGTGTTCCGTCCGAGAAACCCGGTGAATCAACCTTTCGCGCCTCTCTCTTTCCCCCATCTGGAGTGGATTCGGACTTGACTCTCTCCCATCCTGCAATGTTCGTGAAGAAGCTGGTGGAGAAGGCCTCCATCAAGAAGCCTGGTGGGAATTCAGACGGGTTAATAAAAGGCAGCGATTTAGACGTACGTTTGGCTTTTCACTATGGGGTCCCATCCAACGGCGCCAAATTTGCTTATGACAATAACCACAAGATTCTTGCTCTCTCCACAAAGGATGGCAGGATTAAACTATTTGGAAAAAATAATACTCAAGCCATCCTCCAATCTCCTGAGCCAGTACCCAGCAAGTTTCTACAGTTCATCCAGAACCGAGGCATCCTTATAAATGTCACTCTCAATAACCATATTGAGGTTTGGGACATTGACGGGAAGCTGTTGGCTGATGAGTATGTTGTTCAAAAAGAAATTACTTCCTTTGCTGTCATTCAGCATAGCTTCTTCATGTACGTTGGAGATTCTGTTGGCAATATTTCGGTTTTCAACCTGGATCAAGAACCCTGGCATATAGCACAGATGAAATACATCATCCCTCTATCAGCTTCTTATGGGAATCCAACTGAGGTATCAGATGATACTGCTGTGACACATATATTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTTATAATTTTTAGAAATGGCCAAATAATATTATGGGATATTCAAGAAAGCAAACCTATCTTCGGAACTGGTGGAAACATATCGCAGGCATCCCATAATGAAACTAAGAAAGCGACTTCTGCATGCTGGGCATGTCCTCTTGGAAGTAAAGTGGTTGTAGGGTACAGCAACGGAGAGCTTTTAATTTGGAATATCCCTTCTCAAAACGTTGGGAATGATCCAGCATCTGATTGTGCTACTCAGAACACTCCTATGCTCAAGCTTAACCTAGGCTATAAATCAGATAAAATTCCCATTCGCTCAGTAAAATGGATATATGCTGAAGGAAAGGCAAGTCGACTTTATGTCCTCGGAGCTTCTGACATTGCATCTCCAAACTTAGTCCAGGTAGTGTTACTGAATGAGAAGACTGAGTCTCGCACAATTAAGGTGGGCCTTCATTTGGCCGAATGTTGTATTGACATGGAGGTCTTGTCAACTTCAAGTGAGCAAGGCAAGCATAAACAGGATTCTTTCATTTTGATTGGCAAATCAGGCCGTGTTTATGTGTACGATGATACTTTGATCGAAAGGTATCTTCTACAGTGCCAGTCCAAGTCCTCACCCTCACTGCCAAAGGAAGTGATGATTAAGTTGCCACTGCCAGATTCAGGCATCACCGCGACAAAGTTCATCTCAGACAATCCTAATCCCCGAATTCCCGATGAGGAGGAATATGTTCAGCTGTTGAAAAACTACCCACCTCTTATTCCCATTGAAACAAAACACAGAGACGGGGCTATTCTGAACTCTTCCAACTTCACTGGATTTTCAAAAGTCAAAAACTTGTACCTAACTGGCCACTGTGACGGAGCCATAACTTTCTGGGATGCGTCGTGTCCCTTTTTCATCCCAATTTTGCAGTTGAAGCAACAGAGCGAACATGAGTTTTCTCCAAGTGGCGTACCCATAACAGCATTATATTTTGATACCAATTCGCCTCTTCTTGTTTCTGGAGACCAGAGTGGAATGGCTCGCATCTTCCGATTCAAACCCGAACCTTATTCAACCAACAGCTTCATCTCTCTTGCGGGAAGCACAAAAAAAGCGACTGATCATATAATTCACAGTGTGAAACTTGTAAAGACTAATGGTGCTGTACTATGCATGAACATGGATCATGGCTCAAAGCATCTTGCTGTTGGTTCTGATAAAGGATATGTTTCAGTTATTGATATGAATGGTTCAACTCTGTTATATCAGAAACAAATAACAAGTGAGATTAGTACCGGTATCATCTCTCTACAGTTCCGAACATGCAGTTTGCAGGGTTTTAAGAAAAACATTTTAGCCGTTGGAACAAAGGATTCGTCTGTTTTGTCACTTGATAGTGAAACTGGAAACCAATTGAGCGCTGACACCGTTCATCCGAAGAAGCCGTCTAGAGCTCTGCTAATGCAAGTGTTAGATGGACAAGGAGAATTAACCAAGGGACTGGGTACAAGAGAGGCGAATGATTTTGATGATGCAACAACGAAGCAATTGTGCGTTTTGTTGTGTTCTGAGAAAGCTCTGTATGTCTATTCTTTGGTTCATGTTGTTCAGGGTGTTAAAAAGGTGCTTCACAAGAAGAAGTTTCATTCCTCATCCTGTTGCTGGGCATCTACATTCCACACTCATTCTGATATTGGACTTGTGCTCCTTTTCACCAATGGAAAAGTAGAACTAAGGTCTTTGCCAGAGTTGTCCCTGATCGTGGAGGCCTCAATCAGAGATTTCACTTATTCACCTCCGAGATCGAAGTCATTTCCTGATAGACAAATGTGCTGTTCATCCGAAGGAGATCTTGTTATGGTCAATGGGGACCAGGAAATTTTGGTGGCCTCGGTGTTGGCCAGCAGGGACGTTTTCAGGCTTATGGACAGCGTCAGCCGTATCTGCAGGAAAGAAACGATGCTGTCACAAGACGACGTTGTGCCTGCCCCAGTAATGCATAAGGAAAAGAAAAGGGGCATATTTAGCTCTGTTATCAAAGATTTTACTGGAAGTAAAGAAAAGCATGTGACCATCATGGAAACAGAAGATACAAAAGAAAGCATACAGCAACTCTCAGTGATCTTTTCTAATGCAAATTTTGCAAGTGATGCTGACACTAACGATGAGCTCACCATGGATGAGGATGAATGTGAGTTAAACATAGATGACATTGACCTCGAGGATCCTGGAGAAAAACGCAAAGATCAAAGGATACTGGGAACTCTTAATAAGAAGAATTTGGCTGGCAAGTTGCAGGCTCTAAAGGGAAGGTTGAAAGACATGAAGGGCAACACTCAGAAAACATCAGATAATAAGGAAGAGCAGCAGGATGAGAAAGGTGGGGCAGTTGATCAAATCAAGAAAAAATACGGCTTTTCTTCTTCCTCCGATGAAACAAGCACTGCTAAATTGGCACAAAACAAGTTGCAGGAAAACATGCGGAAACTGCAGGGTATCAATCTTAGAGCTACACAGATGCAGGATACGGCAAGATCATTTTCATCATTGGCAAAACAGGTCCTGCGAACTGCTGAACAGGAAAAACGCTGA 3333 0.4323 MQSWERGRRSGCCHLSVKGKNRSNESLTRVPSEKPGESTFRASLFPPSGVDSDLTLSHPAMFVKKLVEKASIKKPGGNSDGLIKGSDLDVRLAFHYGVPSNGAKFAYDNNHKILALSTKDGRIKLFGKNNTQAILQSPEPVPSKFLQFIQNRGILINVTLNNHIEVWDIDGKLLADEYVVQKEITSFAVIQHSFFMYVGDSVGNISVFNLDQEPWHIAQMKYIIPLSASYGNPTEVSDDTAVTHILPQPAAESKRVLIIFRNGQIILWDIQESKPIFGTGGNISQASHNETKKATSACWACPLGSKVVVGYSNGELLIWNIPSQNVGNDPASDCATQNTPMLKLNLGYKSDKIPIRSVKWIYAEGKASRLYVLGASDIASPNLVQVVLLNEKTESRTIKVGLHLAECCIDMEVLSTSSEQGKHKQDSFILIGKSGRVYVYDDTLIERYLLQCQSKSSPSLPKEVMIKLPLPDSGITATKFISDNPNPRIPDEEEYVQLLKNYPPLIPIETKHRDGAILNSSNFTGFSKVKNLYLTGHCDGAITFWDASCPFFIPILQLKQQSEHEFSPSGVPITALYFDTNSPLLVSGDQSGMARIFRFKPEPYSTNSFISLAGSTKKATDHIIHSVKLVKTNGAVLCMNMDHGSKHLAVGSDKGYVSVIDMNGSTLLYQKQITSEISTGIISLQFRTCSLQGFKKNILAVGTKDSSVLSLDSETGNQLSADTVHPKKPSRALLMQVLDGQGELTKGLGTREANDFDDATTKQLCVLLCSEKALYVYSLVHVVQGVKKVLHKKKFHSSSCCWASTFHTHSDIGLVLLFTNGKVELRSLPELSLIVEASIRDFTYSPPRSKSFPDRQMCCSSEGDLVMVNGDQEILVASVLASRDVFRLMDSVSRICRKETMLSQDDVVPAPVMHKEKKRGIFSSVIKDFTGSKEKHVTIMETEDTKESIQQLSVIFSNANFASDADTNDELTMDEDECELNIDDIDLEDPGEKRKDQRILGTLNKKNLAGKLQALKGRLKDMKGNTQKTSDNKEEQQDEKGGAVDQIKKKYGFSSSSDETSTAKLAQNKLQENMRKLQGINLRATQMQDTARSFSSLAKQVLRTAEQEKR 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0025 1110 Pfam Lethal giant larvae(Lgl) like, C-terminal 766 885 IPR013905 -
Lele52g0025 1110 SMART WD40_4 170 209 IPR001680 GO:0005515
Lele52g0025 1110 SMART WD40_4 559 598 IPR001680 GO:0005515
Lele52g0025 1110 SMART WD40_4 461 546 IPR001680 GO:0005515
Lele52g0025 1110 SMART WD40_4 279 320 IPR001680 GO:0005515
Lele52g0025 1110 SMART WD40_4 620 661 IPR001680 GO:0005515
Lele52g0025 1110 Coils Coil 1005 1039 - -
Lele52g0025 1110 Gene3D - 105 446 IPR015943 GO:0005515
Lele52g0025 1110 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 74 1104 - -
Lele52g0025 1110 SUPERFAMILY WD40 repeat-like 631 871 IPR036322 GO:0005515
Lele52g0025 1110 MobiDBLite consensus disorder prediction 17 33 - -
Lele52g0025 1110 CDD R-SNARE_STXBP5_6 1046 1103 - -
Lele52g0025 1110 FunFam Syntaxin-binding protein 5 isoform A 83 242 - -
Lele52g0025 1110 MobiDBLite consensus disorder prediction 1017 1046 - -
Lele52g0025 1110 SUPERFAMILY WD40 repeat-like 107 707 IPR036322 GO:0005515
Lele52g0025 1110 Gene3D - 508 844 IPR015943 GO:0005515
Lele52g0025 1110 MobiDBLite consensus disorder prediction 15 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0025 Lele-ChrLele52 171806 179784 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0020 49 135877 143542 Lele52g0025 52 171806 179784 hybridization
Lele50g0023 50 183679 191403 Lele52g0025 52 171806 179784 hybridization