Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0020 ATGTTCGTGAAGAAGCTGCTGGAGAAAGCCCCCATCAAGAAGGGTGCCAGAATGCGTGAGTTGTGCCTGCAGCCTGGTGGGAATTCAGATGGGTTAAAAGCCAGCGATTTAGACGTACGTTTGGCTTTTCACTATGGGCTCCCATCCAACGCCGCCAAATTAGCTTATGACAATATTCACAAGATTCTTGCTCTCTCCACAAAGTACGTTTTCATCCAAAATCAAGGCATCCTTATAAATGTCACTCTCAAGAACCATATTGAGGTTTGGAACATTGACAAGAAGCTGTTGGCTGATGAGTATGTTGTTCAAAAAGAAATTACTTCCTTTGCTGTCATTCAGCATAGCTTCTACATGTACATTGGAGATTCGGTCGGCAATATTTCGGTTTTCAGCCTGGATCAAGAACCCTGTCATATAACACAGATGAAATACATCATCCCTTTATCAGCTTCTTATGGGAGTCCAACTGAAGTGTCAGATGATACTGCTGTCACACATATATTGCCTCTATCAGCTGCTGAAAGTAAGAGAATTGGTGGAAACATATCACAAGCATCCCATAATGAAACTAAGAAAGCGACTTCTGCATGCTGGGCGTGCCCTTTTGGAAGTAAAGTGGTTGTAGGGTACAGCAACGGAGAGCTTTTAATTTGGAATATCCCTACTCAAAACGTTGGGAATGATTCAGCATCTGATTGTACTACTCAAGACACTCCCATGTTCAAGCGTAACCTAGGCTATAAATCAGATAAAATTCCCATTGGCTCAGTAAAATGGATATATGCTGAAGGGAAGGCAAGTCGACTTTACGTCCTCGGAGCTTCTGACATTGCATCTCCAAACTTAGTCCAGGTAGGGTTACTGAACGAGAAGACTGAGTCTCGGACAATTAAAGTGGGCCTTCATTTGGCTGAATGTTGTATTGACATGGAGGTCTTATCAACTTCAAGTGAGCAAATCAAGCATAAACAGGATTCTTTCATTTTGCTTGGGAAATCAGGCCGTGTTTATGTTTACGATGATACTTTGATCGAAAGGTATCTTCTACAATGCCAGTTCAAGTCCTCACCCTCGCTGCCAAAGGAAGTGATGATTAAGTTACCATTGGCAGATTCAAGCATCACGGCAGCAAAGTTCATCTCAGACAATCCTATTCTCCGAAATCCCGATGATGAGGAATATGTTCAGTTGTTGAAAAACTACCCACCTCTTATTCCCATTGAAACAAAACACAAAGACGTGGCTATTCTGAATGCTTCCAACTTCACTGGATTTTCAAAAGTCAAAAACTTGTACATAACTGGCCACAGTGACGGGGCCATAACTTTCTGGGATGCGTCGTGCCCCTTTTTCATCCCAATTTTGCAGTTGAAGCAACAGAGTGAACATGAGTTTTCTACAAGTGGCATACCCATAACAGCATTATTTTTTGATATCAACTCGCCTCTTCTTGTTTCTGGAGACCAGAGCGGAATGGTTCGCATCTTCAGATTCAAACCTGAACCTTATTCCAGCAACAGCTTCATGTCTCTAGCGGGAAGTACAAAAAAAACGACTGATCATATCATTCATAGTGTGAAACTTGTAAAGACTAATGGTGCTGTACTATCCATGAACATGGATCATGGCTCAAAACATCTTGCTGTTGGTTCTGATCAAGGATATGTGAATGGTGATCAGGAAATTTTGGTTGCCTCAGTGTTGGCCAACAGGGACTTTTTCAGGCTTTTGGACAGCGTCGGCTGCATCTACAGGAAAGAAAGGATGCTATCACAAGAAGACGTTGTTCCTGCCCCAGTAATCCACAAGGAAAAGAAAAAGGGTATAGTTAGCTCTGTTATCAAAGATTTTACTGGAAGTAAAGAAAAGAATGTGAGCCTCATGGAAACAGAAGATACAAAAGAAAGCATACAGCATCTCTCACAGATATTTTCTAATGAAAATTTTGCAAGGGATGCTGACACTAATGATAACCTCACCATGGATGAGGATGAGCCTGAATTAAACATAGATGACATTGACCTCGAGGATCCTGGAGAAAAACGCAAAGATCAAAGGATACTGGGAACTCTCAATAAGAAGAATTTGGCTGGCAAATTTCAGGCTCTAAAGGGAAGGTTGAAAGACATGAAGGGCAACTCTCAGAAAACATCAGATAATAAGGAAGAGCTGCAACAGGATGAGAAAGGTGGCGCAGTTGATCAAATCAAGAAAAAATATGGGTTCTCTTCCTCCTCCGATGAAACAAGCACTGCTAAATTGGCACAAAACAAGATGCAGGAAAACATGCGTAAACTGCAGGGTATCAATCTTCGAGCTACACAGATGCAGGATACGGCAAGATCATTTTCATCATTGGCAAAACAGGTCCTGCGAACTGCTGAACAGGATAAACGTTGA 2403 0.4186 MFVKKLLEKAPIKKGARMRELCLQPGGNSDGLKASDLDVRLAFHYGLPSNAAKLAYDNIHKILALSTKYVFIQNQGILINVTLKNHIEVWNIDKKLLADEYVVQKEITSFAVIQHSFYMYIGDSVGNISVFSLDQEPCHITQMKYIIPLSASYGSPTEVSDDTAVTHILPLSAAESKRIGGNISQASHNETKKATSACWACPFGSKVVVGYSNGELLIWNIPTQNVGNDSASDCTTQDTPMFKRNLGYKSDKIPIGSVKWIYAEGKASRLYVLGASDIASPNLVQVGLLNEKTESRTIKVGLHLAECCIDMEVLSTSSEQIKHKQDSFILLGKSGRVYVYDDTLIERYLLQCQFKSSPSLPKEVMIKLPLADSSITAAKFISDNPILRNPDDEEYVQLLKNYPPLIPIETKHKDVAILNASNFTGFSKVKNLYITGHSDGAITFWDASCPFFIPILQLKQQSEHEFSTSGIPITALFFDINSPLLVSGDQSGMVRIFRFKPEPYSSNSFMSLAGSTKKTTDHIIHSVKLVKTNGAVLSMNMDHGSKHLAVGSDQGYVNGDQEILVASVLANRDFFRLLDSVGCIYRKERMLSQEDVVPAPVIHKEKKKGIVSSVIKDFTGSKEKNVSLMETEDTKESIQHLSQIFSNENFARDADTNDNLTMDEDEPELNIDDIDLEDPGEKRKDQRILGTLNKKNLAGKFQALKGRLKDMKGNSQKTSDNKEELQQDEKGGAVDQIKKKYGFSSSSDETSTAKLAQNKMQENMRKLQGINLRATQMQDTARSFSSLAKQVLRTAEQDKR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0020 800 SMART WD40_4 459 498 IPR001680 GO:0005515
Lele49g0020 800 SMART WD40_4 181 220 IPR001680 GO:0005515
Lele49g0020 800 SMART WD40_4 411 446 IPR001680 GO:0005515
Lele49g0020 800 Coils Coil 708 728 - -
Lele49g0020 800 CDD R-SNARE_STXBP5_6 736 793 - -
Lele49g0020 800 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 556 794 - -
Lele49g0020 800 MobiDBLite consensus disorder prediction 708 762 - -
Lele49g0020 800 Gene3D - 100 237 IPR015943 GO:0005515
Lele49g0020 800 SUPERFAMILY WD40 repeat-like 71 557 IPR036322 GO:0005515
Lele49g0020 800 MobiDBLite consensus disorder prediction 740 762 - -
Lele49g0020 800 Gene3D - 411 644 IPR015943 GO:0005515
Lele49g0020 800 MobiDBLite consensus disorder prediction 708 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0020 Lele-ChrLele49 135877 143542 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0020 49 135877 143542 Lele51g0022 51 143355 150974 hybridization
Lele49g0020 49 135877 143542 Lele52g0025 52 171806 179784 hybridization