LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1267	ATGGGATGCACCAGCTTTGCCACCAATATCATTCCTCACTTGGAGCTCCACAGTTGCTGTTTCAGGCCACTTGGTCCGATCCGGACCCGTTTGACTGCTCCGCGTCTCTGCAACTCCTCCAGGAGTCCGAGTTTGAGGTTCGGGGTCCCGCGGAGGAGTGAGGGGTTTGGCAGAGTTGTCTGTTTTGCTGTCGATGATGAGTCGAGAGAGAATCGGCAGGAGTTGAGTGGAAATGGGAGTGGGGTTCGGTCAGCAATTGAAGATAGGCCGGAACTGGTTGATAATACAAGAGAAGAAACTCTGGAAACTTCTAGACAAGATGGTGAAGGAAGCGCTCTATATGATTTTCTTTACCCTAGTAAAGAACTTCTTCCTGATGATGAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGACAGAGAATCTTTGTATCTGTTCTAGCGGTTGGGGCAGCCATTTTGGGATGTTTTGCATTTTCAAAAGAACTGATAATGATTCTTGAAGATCCTGTAAAATCACAGGGTGTGAGATTTCTTCAGCTAGCTCCCGGGGAGTTTTTCTTCACTTCTTTAAAGGTGTCTGGATACTGTGGCCTCCTCTTGGGAAGTCCTGTCATTCTCTATGAAATCATAGCCTTTGTGCTTCCAGGTCTAACCAAATCTGAGAGAAGGTTTCTGGGGCCAATTGTTTTGGGCTCATCAGTTCTTTTCTATGCCGGAATAGTCTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTAATTATGCTGAAGGGGCTGTTGAATCATTGTGGTCCATTGATCAATACTTTGAGTTTGTACTTGTGCTAATGTTCAGTACCGGCTTGTCTTTCCAGGTACCCGTTATACAATTCCTTTTGGGACAAGTTGGGCTGGTGACTGGAGATCAGATGCTCTCAATTTGGAGGTATGTTGTTGTTGGTGCAGTAGTGGCAGCTGCTGTGCTTACTCCTTCCACTGATCCCCTCACTCAAGTTCTTCTAGCTGCTCCGCTGTTAGGTCTCTACATTGGTGGGGCATGGATGGTCAAACTCACTGGAAAGTAA	1080	0.4593	MGCTSFATNIIPHLELHSCCFRPLGPIRTRLTAPRLCNSSRSPSLRFGVPRRSEGFGRVVCFAVDDESRENRQELSGNGSGVRSAIEDRPELVDNTREETLETSRQDGEGSALYDFLYPSKELLPDDEEMSIFDHLEELRQRIFVSVLAVGAAILGCFAFSKELIMILEDPVKSQGVRFLQLAPGEFFFTSLKVSGYCGLLLGSPVILYEIIAFVLPGLTKSERRFLGPIVLGSSVLFYAGIVFSYLVLTPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLVTGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYIGGAWMVKLTGK	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1267	359	ProSitePatterns	TatC family signature.	274	293	IPR019820	-
	Lele51g1267	359	TIGRFAM	tatC: twin arginine-targeting protein translocase TatC	132	347	IPR002033	GO:0016020
	Lele51g1267	359	MobiDBLite	consensus disorder prediction	87	104	-	-
	Lele51g1267	359	PANTHER	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC	111	359	IPR002033	GO:0016020
	Lele51g1267	359	Pfam	Sec-independent protein translocase protein (TatC)	134	342	IPR002033	GO:0016020
	Lele51g1267	359	Hamap	Sec-independent protein translocase protein TatC [tatC].	127	359	IPR002033	GO:0016020
	Lele51g1267	359	PRINTS	Bacterial Sec-independent translocation TatC protein family signature	274	302	IPR002033	GO:0016020
	Lele51g1267	359	PRINTS	Bacterial Sec-independent translocation TatC protein family signature	131	158	IPR002033	GO:0016020
	Lele51g1267	359	PRINTS	Bacterial Sec-independent translocation TatC protein family signature	205	223	IPR002033	GO:0016020
	Lele51g1267	359	PRINTS	Bacterial Sec-independent translocation TatC protein family signature	223	249	IPR002033	GO:0016020
	Lele51g1267	359	MobiDBLite	consensus disorder prediction	72	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1267	Lele-ChrLele51	8375569	8379136	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele51g1267	51	8375569	8379136	Lele51g1267	51	8375569	8379136	ECH
	Lele49g1251	49	8362425	8366095	Lele51g1267	51	8375569	8379136	hybridization
	Lele50g1576	50	20942475	20945714	Lele51g1267	51	8375569	8379136	hybridization