Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1251 ATGGGATGCACCAGCTTTGCCACCAATATCATTCCTCACTTGGAGCTCCACAGTTGCTGTTTCAGGCCACTTGGCCCGATCCGGACCCGTTTGACTGCTCCGCGTCTCTGCAACTCCTCCAGGAGTCCGAGTTTGAGGTTCGGTGTCCCGCGGAGGAGTGAGGGGTTTGGCAGAGTTGTCTGTTTTGCTGTCGATGATGAGTTGAGAGAGAATAGGCAGGAGTCGAGTGGAAGTGGGAGTGGGGTTGGGTCAGCAATTGAAGATAGGCCGGAACTGGTTGATAATACAAGAGAAGAAACTCTGGAAAATTCTAGACAAGATGGTGAAGGAAGCGCTCTATTTGATTTTCTTTACCCTAGTAAAGAACTTCTTCCTGATGATGAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGGCAGAGAATCTTTGTATCTGTTCTAGCGGTTGGGGCAGCCATTTTGGGATGTTTTGCATTTTCAAAAGAACTGATAATGATTCTTGAAGATCCTGTAAAATCACAGGGTGTGAGATTTCTTCAGCTGGCTCCCGGGGAGTTTTTCTTCACTTCTTTAAAGGTGTCTGGATACTGTGGCCTCCTCTTGGGAAGTCCTGTCATTCTCTATGAAATCATAGCCTTTGTGCTTCCAGGTCTAACCAAATCTGAGAGAAGGTTTCTGGGGCCAATTGTTTTGGGCTCATCAGTTCTTTTCTATGCCGGAATAGTCTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTAATTATTCTGAAGGGGCTGTTGAATCCCTGTGGTCCATTGATCAATACTTTGAGTTTGTACTTGTGCTAATGTTCAGTACCGGCTTGTCTTTCCAGGTACCCGTTATACAATTCCTTTTGGGACAAGTAGGGCTGGTGACTGGCGATCAGATGCTCTCAATTTGGAGGTATGTTGTAGTTGGTGCAGTAGTGGCAGCTGCTGTGCTTACTCCTTCCACTGATCCCCTCACTCAAGTTCTTCTAGCTGCTCCACTGTTAGGTCTCTACATTGGTGGGGCATGGATGGTCAAGCTCACTGGAAGGTGA 1080 0.4639 MGCTSFATNIIPHLELHSCCFRPLGPIRTRLTAPRLCNSSRSPSLRFGVPRRSEGFGRVVCFAVDDELRENRQESSGSGSGVGSAIEDRPELVDNTREETLENSRQDGEGSALFDFLYPSKELLPDDEEMSIFDHLEELRQRIFVSVLAVGAAILGCFAFSKELIMILEDPVKSQGVRFLQLAPGEFFFTSLKVSGYCGLLLGSPVILYEIIAFVLPGLTKSERRFLGPIVLGSSVLFYAGIVFSYLVLTPAALNFFVNYSEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLVTGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYIGGAWMVKLTGR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1251 359 MobiDBLite consensus disorder prediction 72 93 - -
Lele49g1251 359 ProSitePatterns TatC family signature. 274 293 IPR019820 -
Lele49g1251 359 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 112 359 IPR002033 GO:0016020
Lele49g1251 359 TIGRFAM tatC: twin arginine-targeting protein translocase TatC 132 347 IPR002033 GO:0016020
Lele49g1251 359 Hamap Sec-independent protein translocase protein TatC [tatC]. 127 359 IPR002033 GO:0016020
Lele49g1251 359 Pfam Sec-independent protein translocase protein (TatC) 134 342 IPR002033 GO:0016020
Lele49g1251 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 274 302 IPR002033 GO:0016020
Lele49g1251 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 131 158 IPR002033 GO:0016020
Lele49g1251 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 205 223 IPR002033 GO:0016020
Lele49g1251 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 223 249 IPR002033 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1251 Lele-ChrLele49 8362425 8366095 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1251 49 8362425 8366095 Lele49g1251 49 8362425 8366095 ECH
Lele49g1251 49 8362425 8366095 Lele51g1267 51 8375569 8379136 hybridization
Lele49g1251 49 8362425 8366095 Lele52g1529 52 19325132 19328094 hybridization