Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1576 ATGGGATGCACCAGCTTTGCTACCAATATCATCCCTCACTTGGAGCTCCACAGCTGTTGTTTCAGGCCACTTGGCCTGATCCGGACCCGCCTGACTGTTCCGCGTCTCTGCAACTCCTCGAGGAGTCCGAGTTTGAGGTTCGGTGTCTCGCGGAGGGGTAAAGGGTTTGGCAGAGTTGTATGCTTTTCTGTCGATGATGAGTTGAGAGAGAATCGGCAGGAGTTGAATGGAAGTGGGAGCGGGGTTGGGTCAGCCATTGAAGATAGGCCGGAGCTGGTTGATAATGCAAGAAAAGAAACTCTGGAAAATTCTAGACAAGATGGTGAAGGAGGCGCTCTCTATGATTTTCTTTACCCTAGTAAAGAACTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGACAGAGAATATTTGTATCTGTATTAGCAGTTGGAGCAGCCATTTTAGGATGTTTTGCATTTTCAAAAGAACTGATAATGATTCTTGAAGATCCTGTAAAATCACAGGGTGTGAGATTTCTTCAGCTAGCTCCTGGGGAGTTTTTCTTCACTACTTTAAAGGTGTCTGGATACTGTGGCCTCCTCTTGGGAAGTCCTGTCATTCTCTATGAAATCATAGCCTTTGTGCTTCCAGGTCTAACAAAATCTGAGAGAAGGTTTCTGGGGCCAATTGTTTTGGGCTCATCAGTTCTTTTCTATGCCGGAATAGTCTTTTCCTACCTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTAATTATGCTGAAGGGGCTGTTGAATCATTGTGGTCCATTGATCAATACTTTGAGTTTGTACTAGTGCTAATGTTCAGTACCGGCTTGTCTTTCCAGGTACCCGTTATACAATTCCTATTGGGACAGGTTGGGCTTGTGACTGGAGATCAGATGCTCTCAATTTGGAGGTATGTTGTGGTTGGGGCAGTAGTGGCTGCTGCTGTGCTTACTCCTTCCACTGATCCTCTCACTCAAGTTCTTCTAGCTGCTCCGCTGTTAGGTCTCTACATTGGTGGGGCATGGATGGTCAAGCTCACTGGAAGGTGA 1080 0.4556 MGCTSFATNIIPHLELHSCCFRPLGLIRTRLTVPRLCNSSRSPSLRFGVSRRGKGFGRVVCFSVDDELRENRQELNGSGSGVGSAIEDRPELVDNARKETLENSRQDGEGGALYDFLYPSKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAFSKELIMILEDPVKSQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTKSERRFLGPIVLGSSVLFYAGIVFSYLVLTPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLVTGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQVLLAAPLLGLYIGGAWMVKLTGR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1576 359 Pfam Sec-independent protein translocase protein (TatC) 134 342 IPR002033 GO:0016020
Lele50g1576 359 ProSitePatterns TatC family signature. 274 293 IPR019820 -
Lele50g1576 359 Hamap Sec-independent protein translocase protein TatC [tatC]. 127 359 IPR002033 GO:0016020
Lele50g1576 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 274 302 IPR002033 GO:0016020
Lele50g1576 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 131 158 IPR002033 GO:0016020
Lele50g1576 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 205 223 IPR002033 GO:0016020
Lele50g1576 359 PRINTS Bacterial Sec-independent translocation TatC protein family signature 223 249 IPR002033 GO:0016020
Lele50g1576 359 TIGRFAM tatC: twin arginine-targeting protein translocase TatC 132 347 IPR002033 GO:0016020
Lele50g1576 359 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 113 359 IPR002033 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1576 Lele-ChrLele50 20942475 20945714 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1576 50 20942475 20945714 Lele50g1576 50 20942475 20945714 ECH
Lele50g1576 50 20942475 20945714 Lele51g1267 51 8375569 8379136 hybridization
Lele50g1576 50 20942475 20945714 Lele52g1529 52 19325132 19328094 hybridization