Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1258 ATGTTGTTTCGTTGCAACATACTTGCCTTTGTCAGTGGTGGAGCTCACCCTGTTTACCCAAGTAATAAAGTAATGATTTGGGATGATCATCAGTCCCAATGCATCGACGAGCTATCATTTCAATCCGAGGTCAAAGGGGCCTGTCTTAGAAGGGACCGAATTGTAGTGGCTCTGGTTGCTTGCCACCGCCAGCTGCAAGGGAATTCTGCAGAGTCCTTTGCCATAGTAACTGAGATGAGCAGCCCAGCTGAGGAACACTCGCTAGCGAAAGCTGCGAAATTAGTTGAAAATCTTTATCGCTTCCGAGACACCTATTTCCCGGAAAATCCAGATGACAAGATCTCCAAACTGCGAGAACAATCCGATCTTGCGCTGAAATTCCTTGATTCTATTCCTCCAGAAGAAAGGAAGTCGCCTTTGCAACGTGCAACATTTGAGTATTTGAGAGGGAAGATATTGGATGTCTGTCCTGACTATAACAAAGAAGCAGAGGATCATCTATCAAAAGCTGTAAGCACAATCAAGTTGTTAGTTTCTGTTAAGCTAAACCCATCTCTTGCAGATGCTTGGCTATGTTTAGGCAACTGCATTTGGAAGAAAGGAGATCTATCTGCTGCTAAAAACTGCCTTAGTCTTGCATTAAGCAAGGTTAGTGCTGAAATTAGATTCCATGGTCCTAACAAAAATATTCTTTGTCAATTATCAATGCTTAAAAGAAAAATGTCACAAGGTGCTGAGAATCAGGCAGAACTGGTTGAGGAAAGCATTCAATACGCAAAGGAAGCTATCACTTTGGATGTCAAGGATGGTTATTCTTGGTATAATCTTGGAAATGCATGCCTTACTAGTTTTTTCGCCTCTGGATCTTGGGATCATAGTAAACTTCAACATGCTGTAAAAGCATATCAAAATTCTGAGAAAGATGAAAGAATGAAGTCCAATCCAGATCTATATTTTAATAGTGCCATTGTTAATAGATATCTAGAGAATTATGAGAGGGCCCTCAGTGGGTTCGAGGCTGCTGCTTTAAAGGATCCAAGTCTGAATGCTGCTGCAGAGGTTCAGAATATAGTCAGCCTACTTGACAAGTTGGACAATCTTATGAGGGGGGGACATTTAAAAGCTAAGCGAATGGCTAGTTTGGCCTCATCTTTAGCTGCTGTAAATTTGAATCCATCGTACAATAGAGCTAATATAGACCGTCTGTTGGAGGGTCTGAACAGAGCAGTAGCAATAGATGGGAAGGTATTATTCTTTGTTACGAATGACACTGTTGCTCCCCTATACTATTTGCTTTGTGATTCAAACCAAAATTGCTTTGTTCTTACAGTTTATGGCCTACGTATAGATGTGATCAAGGAAAGAGATCAGCTAACGCTGCTTGATCCATATTTGCGTCAAGTTGATTTTTCCTGGAAGGAGAAGCATTACCAGTTCAAGTCTATACGCGTGGACTTCCCAGAACAAATACTTGTGAATGGAAAAGCTGTGACCCCTCAACAAGCTGCTCTGTCGTCAATACATGCACAACACAAACCTTGA 1542 0.415 MLFRCNILAFVSGGAHPVYPSNKVMIWDDHQSQCIDELSFQSEVKGACLRRDRIVVALVACHRQLQGNSAESFAIVTEMSSPAEEHSLAKAAKLVENLYRFRDTYFPENPDDKISKLREQSDLALKFLDSIPPEERKSPLQRATFEYLRGKILDVCPDYNKEAEDHLSKAVSTIKLLVSVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLSLALSKVSAEIRFHGPNKNILCQLSMLKRKMSQGAENQAELVEESIQYAKEAITLDVKDGYSWYNLGNACLTSFFASGSWDHSKLQHAVKAYQNSEKDERMKSNPDLYFNSAIVNRYLENYERALSGFEAAALKDPSLNAAAEVQNIVSLLDKLDNLMRGGHLKAKRMASLASSLAAVNLNPSYNRANIDRLLEGLNRAVAIDGKVLFFVTNDTVAPLYYLLCDSNQNCFVLTVYGLRIDVIKERDQLTLLDPYLRQVDFSWKEKHYQFKSIRVDFPEQILVNGKAVTPQQAALSSIHAQHKP 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1258 513 SUPERFAMILY TPR-like 161 339 IPR011990 GO:0005515
Lele51g1258 513 Pfam Tetratricopeptide repeat protein 5 OB fold domain 394 503 IPR032076 -
Lele51g1258 513 SMART tpr_5 315 348 IPR019734 GO:0005515
Lele51g1258 513 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele51g1258 513 Gene3D Tetratricopeptide repeat domain 81 370 IPR011990 GO:0005515
Lele51g1258 513 Gene3D - 372 513 IPR038645 -
Lele51g1258 513 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 81 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1258 Lele-ChrLele51 8332851 8341825 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1258 51 8332851 8341825 Lele51g1258 51 8332851 8341825 ECH
Lele49g1240 49 8307973 8317571 Lele51g1258 51 8332851 8341825 hybridization
Lele50g1589 50 21018456 21022333 Lele51g1258 51 8332851 8341825 hybridization