Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1216 ATGGTGGGAGGTGCTGTAGCAGATCCTCCAAACTTCAAGAAATATGGCGTTCCTTCCTACTCAGCCGCATGGATCCCACCAAATGTCATCAAATCAGTATTGAATCAAAAAACTGGTGAAGCCTCTGACAACGCCGACAGCTCCACGCCTCAGCCACCCGAGCAGTCCGACGAGCTCTACCTTGCGATCACTGGTGGTGGTGGTGAAGGCAGTAGCGGTATTCCCAATGCTGTGTTGCTTGCATATTTTGATGTCGCATCTAATTCTCTCTCTGATCAGCCAGTGGGCAGGCTTGGAACTGGTTCTGAGTTGCCTTATAGAATGGCACTTCACCCCGGTGGAGATGGCCTTATTTGTGCGATGCCAAAGAGTTGCAGACGGTTTGAATGGAACCAAAACAAGAGTGCAGAAAATCATAAATTAGGTCTAAAGGTTTCTGATAAAGTACTCAGTGAGTTGGAGGATGTCGGGCAGCAGTTAGCTCTGGCATTTGACAATGATGGCACTATGCTAGCTGTTGGTGGGGAGGATGGCAATCTGAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCAATGAGATTAAAGCTTATTCGACAGTAAAAGATTTACATTTCAGCTCTGATGGTAAAATGCTTGTCTCTTTGGGAAGTGGTGGGCCGTGCAGGGTTTGGGATGTTTCCTCATCAACGGTCTTAACTTCCATATCAAGTAAAAAGGGTGAGGTTTTTAGCTCTTGCAGATTTTCTCAAATAAATGATGGGACCCATGTCTTGTATATTGCTGCCATGACAGACAAAGGTGGGAGCATTCTAACATGGGATGCAAAAACTGGGTCAAGGATTGGCTCAAAGCATATTACTCGTGATTCAATCTCTGCATTCAATGTCTCAATTGATGGAAAGTTAGTTGCATGTGGAACACCTTCAGGAGACATTGTGATTGTAAATTCAACAAATAGGAAGATTCTGTCAATGATTAAAAAGGCTCACCTTGGCATAGTAACTGCGTTAGCTTTCTCCAATGATTTAAGGGCGTTGGCTTCTGTATCCTTTGATTCAAGTACAAGGGTCACTGTAATTGAGGAGAAGCAGAAAAGTGGAGGATTGAACTTATGGATTGCTGTACTCTTCATCATACTTGCAATTGTAGCTGCCTATTTCCTGAAACTTCAAGACATTGACAAGTGGAAATGCCGCCACACTGCTGCTCCTGACCCGGGAAAATCGCCACTTCCGCTGATCTTGCTCGATTTCCTTCACTCTCTCGTTCCGTTTGTGTTTCTTTCGACTGCGAAAATGGATCCATCTTCAGTTCTGTATAACCAGCTGAAGTCAGCAAACCCATTCTTCCTTCTAGCGGGTCCAAATGTGATTGAATCTGAGGAGCACGTTCTCCGGATGGCTAAGCACATAAAGAGTATCACATCAAAAGTTGGAGTACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCCAATCGAACATCATCAAAATCATTTCGCGGCCCAGGCATGGATGAAGGATTGAAGATACTTGAGAAGGTCAAAATAGCCTATGACATCCCTATTGTGACAGATGTGCATGAGGCTAACCAGTGCGAACCAGTTGGCAGGGTTGCAAACATTATTCAGATTCCAGCATTCTTATGTCGTCAAACAGATCTTCTAGTGGCAGCAGCCAAAACTGGAAAAATTGTCAACATCAAGAAAGGCCAGTTCTGTGCTCCTTCTGTCATGACAAATTCAGCTGAAAAGATTAGATTGGCTGGAAATCCAAATGCGATGGTTTGTGAGAGAGGAACTATGTTTGGTTACAATGATTTGATTGTTGATCCACGAAACCTGGAGTGGATGAGAGAAGCCAATTGTCCTGTTGTAGCTGATATCACACATTCATTACAACAGCCTGCTGGGAAAAAGTTGGACGGTGGAGGTGTTGCAAGTGGAGGCCTTCGAGAATTGATACCATGCATTGGAAGGACAGCAGTTGCTGTTGGAGTGGACGGGATTTTCATGGAGGTACATGATGATCCCCTCAAGGCACCTGTTGATGGTCCAACACAGTGGCCTTTGCGCCATCTGGAGGAACTGCTGGAAGAACTCGTAGCTATCTCTAGGGTAAGCAAAGGGAAACAAAAATTCAACATTGATCTCACGCCATACCGTGAATAG 2172 0.4461 MVGGAVADPPNFKKYGVPSYSAAWIPPNVIKSVLNQKTGEASDNADSSTPQPPEQSDELYLAITGGGGEGSSGIPNAVLLAYFDVASNSLSDQPVGRLGTGSELPYRMALHPGGDGLICAMPKSCRRFEWNQNKSAENHKLGLKVSDKVLSELEDVGQQLALAFDNDGTMLAVGGEDGNLRVFKWPSMEIILNEIKAYSTVKDLHFSSDGKMLVSLGSGGPCRVWDVSSSTVLTSISSKKGEVFSSCRFSQINDGTHVLYIAAMTDKGGSILTWDAKTGSRIGSKHITRDSISAFNVSIDGKLVACGTPSGDIVIVNSTNRKILSMIKKAHLGIVTALAFSNDLRALASVSFDSSTRVTVIEEKQKSGGLNLWIAVLFIILAIVAAYFLKLQDIDKWKCRHTAAPDPGKSPLPLILLDFLHSLVPFVFLSTAKMDPSSVLYNQLKSANPFFLLAGPNVIESEEHVLRMAKHIKSITSKVGVPLVFKSSFDKANRTSSKSFRGPGMDEGLKILEKVKIAYDIPIVTDVHEANQCEPVGRVANIIQIPAFLCRQTDLLVAAAKTGKIVNIKKGQFCAPSVMTNSAEKIRLAGNPNAMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIGRTAVAVGVDGIFMEVHDDPLKAPVDGPTQWPLRHLEELLEELVAISRVSKGKQKFNIDLTPYRE 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1216 723 Hamap 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 444 711 IPR006269 GO:0005737|GO:0008676
Lele51g1216 723 Gene3D Aldolase class I 432 717 IPR013785 -
Lele51g1216 723 TIGRFAM KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 449 709 IPR006269 GO:0005737|GO:0008676
Lele51g1216 723 SUPERFAMILY Aldolase 445 710 - -
Lele51g1216 723 SMART WD40_4 146 184 IPR001680 GO:0005515
Lele51g1216 723 SMART WD40_4 278 317 IPR001680 GO:0005515
Lele51g1216 723 SMART WD40_4 191 226 IPR001680 GO:0005515
Lele51g1216 723 SMART WD40_4 320 360 IPR001680 GO:0005515
Lele51g1216 723 Pfam DAHP synthetase I family 448 699 IPR006218 GO:0009058
Lele51g1216 723 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 434 721 IPR006269 GO:0005737|GO:0008676
Lele51g1216 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 235 IPR001680 GO:0005515
Lele51g1216 723 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 60 358 IPR011047 -
Lele51g1216 723 FunFam SEC12-like protein 2 53 365 - -
Lele51g1216 723 Pfam WD domain, G-beta repeat 161 183 IPR001680 GO:0005515
Lele51g1216 723 Gene3D - 54 367 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1216 Lele-ChrLele51 7994863 8005877 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1216 51 7994863 8005877 Lele51g1216 51 7994863 8005877 ECH
Lele49g1196 49 7937343 7948510 Lele51g1216 51 7994863 8005877 hybridization
Lele50g1645 50 21499094 21503439 Lele51g1216 51 7994863 8005877 hybridization