Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele51g1083 | ATGAAAGATTTGGTTACTAAGGGTTGGGCGTCAAAACCAACCGGACCAAATCCACATGGTGGCTGTGCTATGTGCTATGCGATACTAATCCGCATCCGCCGTTACGCTTCTTCGTCTTCTGCATTTTCCCCTTCTCTGCTTCGTAAAGCTCTCCCTTTTGCCTCCTTCTCCTCCGCATCGCAATCCACATTTCAAGCATCAGCAGCCATGGTGGCTCATGCTAAAGACGAAGCCTATCTCAACGCTGTCATCCCCAAGCGTATCGAACTCTTCGAAGCCATCAAAGCTCAGCAACTCGCTCATCGCCAATCCCTCCCTGCCGATCCCATCAAGATAACTTTGCCGGACAAGAATGTCAAGGAAGGGAAGAAGTGGGTGACTTCACCCATGGATATTGCTAGAGAGATTTCCAAGAATTTGGCTGCAAATGCTTTGATTGCCAAAGTGAATGGGGTCCTATGGGACATGACAAGGCCCTTTGAAGGTGATTGTGAGCTTCAGCTTTTCAAATTTGAAGACGATGAAGGACGCGACACTTTCTGGCATTCCAGTGCTCACATTTTGGGGCAGGCCCTTGAGGTGGAGTATGGATGTAAGCTCTGCATTGGGCCCTGCACCACTAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGTGACTTGAGTTTGAATGATGATCACTTTAAGCAGATAGAGTCTCAAACTACGAAAGCTGTTAAGGATGCACAACCATTTGAACGTATTGAAGTATCAAGGGATCAGGCACTTGAAATGTTTTCTGATAATAAGTTTAAGGTAGAAATCATCAATGATTTGCCTGCAGACAAAACCATCACAGTATACAGATGTGGTCCGTTGGTTGATCTGTGTCGTGGACCACACATACCTAACACATCCTTTGTGAAAGCATTTGCTTGTCTAAAGGCTTCCTCAGCATACTGGAGAGGGGACAAAGACCGTGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAATATATCAAACGGTTGGAGGAAGCTAAAAAGTATGACCACAGATTGTTGGGTGTAAAACAGGAACTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCCCATGGCACACGGATTTACAGCAAACTGATGGAATTTATTCGAAATCAATATAGAGAAAGAGGTTACCAAGAGGTTATATCTCCTAATGTATATAATATGGAGCTGTGGGAGCAATCTGGACATGCTGCAAACTACAAGGAGAATATGTTTGTCTTTGAGATAGAAAAGCAGGAGTTTGGGTTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAGCACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTGACTCGTGTCAGGAGATTTCAGCAGGATGATGCTCATATCTTCTGCAGGGAGTCCCAGGTAAAGGAGGAAGTGAGAGTCGCCTTGGATTTTATCAATTATGCCTATAACATATTTGGTTTCACCTATGATCTGAAGCTTTCCACGAGGCCAGAGAAATACCTTGGAGATTTAGCAACATGGGAGAAGGCTGAAACTGCGCTTAAAGAAGCTTTAGATGAGTTTGGCAAGCCTTGGCAGATAAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCGGATGCATTGAACAGGAAATTTCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAAACCTGTAATGATACACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCTATATTGTTGGAGCATTACAAGGGCAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTGTCAGAGAAATCACAGTCTTATGCAATTGAGATGCGAGATAAGATTCATCAAGCAGGTTATTATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGTGAAGCTCAGTTAGCACAGTACAACTACATACTGGTGGTTGGTGAGGAGGAAGCCAAGACCGGACAGGTAAGTGTACGGGTTAGAGATAACTCAGACCACAGGGTTATGAGTACTGAGAGCCTACTCAAACTCTTCAGTGATGAAGTTGCAGCCTTCCATTGA | 2235 | 0.4416 | MKDLVTKGWASKPTGPNPHGGCAMCYAILIRIRRYASSSSAFSPSLLRKALPFASFSSASQSTFQASAAMVAHAKDEAYLNAVIPKRIELFEAIKAQQLAHRQSLPADPIKITLPDKNVKEGKKWVTSPMDIAREISKNLAANALIAKVNGVLWDMTRPFEGDCELQLFKFEDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDHFKQIESQTTKAVKDAQPFERIEVSRDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYIKRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYSKLMEFIRNQYRERGYQEVISPNVYNMELWEQSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKEEVRVALDFINYAYNIFGFTYDLKLSTRPEKYLGDLATWEKAETALKEALDEFGKPWQINEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYAIEMRDKIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHRVMSTESLLKLFSDEVAAFH | 744 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele51g1083 | 744 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 428 | 637 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lele51g1083 | 744 | CDD | ThrRS_core | 351 | 647 | IPR033728 | - | |
| Lele51g1083 | 744 | PRINTS | Threonyl-tRNA synthetase signature | 642 | 654 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | PRINTS | Threonyl-tRNA synthetase signature | 615 | 628 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | PRINTS | Threonyl-tRNA synthetase signature | 470 | 493 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | PRINTS | Threonyl-tRNA synthetase signature | 571 | 599 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | PRINTS | Threonyl-tRNA synthetase signature | 437 | 465 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | SMART | tRNA_SAD_4 | 278 | 327 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele51g1083 | 744 | FunFam | Threonine--tRNA ligase mitochondrial 1 | 641 | 744 | - | - | |
| Lele51g1083 | 744 | SUPERFAMILY | Class II aaRS ABD-related | 635 | 740 | - | - | |
| Lele51g1083 | 744 | Gene3D | - | 640 | 743 | IPR036621 | - | |
| Lele51g1083 | 744 | TIGRFAM | thrS: threonine--tRNA ligase | 181 | 736 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 278 | 327 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lele51g1083 | 744 | Gene3D | Bira Bifunctional Protein; Domain 2 | 331 | 639 | IPR045864 | - | |
| Lele51g1083 | 744 | SUPERFAMILY | ThrRS/AlaRS common domain | 173 | 349 | IPR018163 | GO:0000166 | |
| Lele51g1083 | 744 | FunFam | Threonyl-tRNA synthetase, mitochondrial | 174 | 331 | - | - | |
| Lele51g1083 | 744 | CDD | ThrRS_anticodon | 647 | 736 | - | - | |
| Lele51g1083 | 744 | FunFam | Threonine--tRNA ligase mitochondrial 1 | 331 | 459 | - | - | |
| Lele51g1083 | 744 | Hamap | Threonine--tRNA ligase [thrS]. | 175 | 742 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lele51g1083 | 744 | Pfam | TGS domain | 110 | 170 | IPR004095 | - | |
| Lele51g1083 | 744 | SUPERFAMILY | Class II aaRS and biotin synthetases | 351 | 634 | IPR045864 | - | |
| Lele51g1083 | 744 | FunFam | Threonine--tRNA ligase, cytoplasmic | 108 | 169 | - | - | |
| Lele51g1083 | 744 | Pfam | Anticodon binding domain | 649 | 737 | IPR004154 | - | |
| Lele51g1083 | 744 | Gene3D | - | 173 | 330 | - | - | |
| Lele51g1083 | 744 | SUPERFAMILY | TGS-like | 110 | 170 | IPR012676 | - | |
| Lele51g1083 | 744 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 376 | 642 | IPR006195 | - | |
| Lele51g1083 | 744 | CDD | TGS_ThrRS | 110 | 175 | - | - | |
| Lele51g1083 | 744 | Gene3D | - | 108 | 169 | IPR012675 | - | |
| Lele51g1083 | 744 | PANTHER | THREONINE-TRNA LIGASE | 79 | 743 | - | - | |
| Lele51g1083 | 744 | FunFam | Probable threonine--tRNA ligase, cytoplasmic | 466 | 640 | - | - | |
| Lele51g1083 | 744 | ProSiteProfiles | TGS domain profile. | 108 | 170 | IPR004095 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele51g1083 | Lele-ChrLele51 | 7003572 | 7017200 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele51g1083 | 51 | 7003572 | 7017200 | Lele51g1083 | 51 | 7003572 | 7017200 | ECH | |
| Lele49g1068 | 49 | 6903600 | 6921718 | Lele51g1083 | 51 | 7003572 | 7017200 | hybridization | |
| Lele50g1157 | 50 | 7784677 | 7804494 | Lele51g1083 | 51 | 7003572 | 7017200 | hybridization |