Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1072 ATGGCCGAAGAGAGCGTCGTTGAGTCTAGCGATTTGCCGGTGAAGAGGCAGAGGGAAGAGGACGAAGAGAATGGGGTCTCTGCTTCTACCATTTCCATGGAGACAGACATGAATGGTGACAAGAATCCTGATTTTATGTCTTCAGTTATTCCTGGGTGGTTCTCCGAAGTTAGCTCAATGTGGCCTGGAGAGGCACACTCTTTGAAAGTTGAAAAGACCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGGGGAGATGGTGGGGTGTTGCGGGAAGTCGCACGGCATTCTTCTGTCGAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCGAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCGCGTGTGACACTTCATATTGGTGATGGAGTCGCTTTTTTGAGAGATGTTCCAACAGGAACTTATGATGCAATTATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGATAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAGGCTGAAAGTATATGGCTTCACATGCATATTATTGAGGGCCTTGTTGATAATTGTCGCCAGATATTTAAAGGCTCTGTTGAGTATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGGTAATCGGTTTTATGCTTTGCTCGACCGAAGGACCTCCGGTTGATTTCAAGCATCCAGTGAACCCCATAGATGCAAATGATAATCAGAAATCAATAAGGCCACTGAAGTTTTACAACTCTGAGATTCATTCCGCGTCATTTTGCCTTCCATCGTTTGCAAGGAGAGTGATCGATTCTAAAGCGAACTGA 1026 0.4405 MAEESVVESSDLPVKRQREEDEENGVSASTISMETDMNGDKNPDFMSSVIPGWFSEVSSMWPGEAHSLKVEKTLFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVTLHIGDGVAFLRDVPTGTYDAIIVDSSDPIGPAQELFEKPFFELVDKALRPGGVVSTQAESIWLHMHIIEGLVDNCRQIFKGSVEYAWTSVPTYPSGVIGFMLCSTEGPPVDFKHPVNPIDANDNQKSIRPLKFYNSEIHSASFCLPSFARRVIDSKAN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1072 341 Gene3D Spermidine synthase, tetramerisation domain 45 103 IPR037163 -
Lele51g1072 341 TIGRFAM speE: spermidine synthase 53 331 IPR001045 GO:0003824
Lele51g1072 341 PIRSF Spermidine_synth 41 341 IPR030668 GO:0006595
Lele51g1072 341 Hamap Polyamine aminopropyltransferase [speE]. 52 337 IPR001045 GO:0003824
Lele51g1072 341 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 339 IPR001045 GO:0003824
Lele51g1072 341 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 130 143 IPR030373 -
Lele51g1072 341 Gene3D Vaccinia Virus protein VP39 104 341 IPR029063 -
Lele51g1072 341 CDD AdoMet_MTases 129 237 - -
Lele51g1072 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 337 IPR029063 -
Lele51g1072 341 FunFam Spermidine synthase 1 104 341 - -
Lele51g1072 341 FunFam Spermidine synthase 1 44 103 - -
Lele51g1072 341 MobiDBLite consensus disorder prediction 9 25 - -
Lele51g1072 341 Pfam Spermine/spermidine synthase domain 109 296 - -
Lele51g1072 341 Pfam Spermidine synthase tetramerisation domain 52 106 IPR035246 -
Lele51g1072 341 MobiDBLite consensus disorder prediction 1 41 - -
Lele51g1072 341 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 288 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1072 Lele-ChrLele51 6920112 6923655 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1072 51 6920112 6923655 Lele51g1072 51 6920112 6923655 ECH
Lele49g1060 49 6825017 6828607 Lele51g1072 51 6920112 6923655 hybridization
Lele50g1146 50 7659992 7663907 Lele51g1072 51 6920112 6923655 hybridization