Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1058 ATGCTTCTTGTTTTGCTCTCTAGTAGCTCTGTTTTGTTGAATTTTTCTTTAGAGGATCTGTTGAATGAAGAGAGGGTAAGTGGTGTCAAGGTAATATCATACTTATTCCTTGTCAATATAAAGAAAGACTTTCCCTGCCTCCTTCTTGCCCACATAGATGAAAAAGTAGCTGGGATTTCATCTTCCAAAATTGTAGATTCAAGGAGTAGTTGGTGTCAGCTGGAAATTTGTTGTCCTTTTCCTATGAAGCAAGCTAGCCAATACTCCGTAGTCCATAAAGCTACTCAGTGTTCGCCTTCTCCTGTACTCTCTTTTGTGGAGAGAGAGCCTCAAGATAATGAAACTTCTCATGTAACGGCTGTTGATTCAGAACATGGATGCCCAAAGTCAGCAAATGAGTCAACTTCATCTAAGAGCATGCGAGATGTACATATCTCAATGAGGTTAACGGAGGACTTTCTTGAGCTTGCTAAAGAAAATACAGAGAAGGATCTGGAAACATGTGGTATACTAGGGGCCTTCCTTGCAAAGGGAACCCTCTACATGACCACTCTGATTATACCAAAACAGGAATCAACTTCCAGTTCTTGTCAGGCTACAAACGAGGAGGAAGTTTTTGCAATTCTAAATGAAAGATCCCTTTTACCTGTGGGATGGATTCACACCCATCCTTCTCAAAATTGTTTCATGTCATCAGTGGATCTGCACACTCAATATTCTTATCAGGTAATGGTTCCTGAGGCTTTTGCCATTGTCGTGGCTCCTAAAGATGCCTCAAGGAGCTGTGGACTGTTTCGTGTAACTGACCCTGATGGAATGAGTATTCTAAAAGGTTGCCCAGAGACAGGATTTCATCCACACACAGAACCAGACAACGGGAGTCCCATGTATGAGCAATGCTCCAATGTCTACAAGAACTCCAATCTGAGGTTTGAAATCTTTGACTTGCGCTGA 954 0.4193 MLLVLLSSSSVLLNFSLEDLLNEERVSGVKVISYLFLVNIKKDFPCLLLAHIDEKVAGISSSKIVDSRSSWCQLEICCPFPMKQASQYSVVHKATQCSPSPVLSFVEREPQDNETSHVTAVDSEHGCPKSANESTSSKSMRDVHISMRLTEDFLELAKENTEKDLETCGILGAFLAKGTLYMTTLIIPKQESTSSSCQATNEEEVFAILNERSLLPVGWIHTHPSQNCFMSSVDLHTQYSYQVMVPEAFAIVVAPKDASRSCGLFRVTDPDGMSILKGCPETGFHPHTEPDNGSPMYEQCSNVYKNSNLRFEIFDLR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1058 317 SMART pad1_6 142 270 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele51g1058 317 Gene3D Cytidine Deaminase, domain 2 120 317 - -
Lele51g1058 317 FunFam AMSH-like ubiquitin thioesterase 2 123 317 - -
Lele51g1058 317 MobiDBLite consensus disorder prediction 113 141 - -
Lele51g1058 317 SUPERFAMILY JAB1/MPN domain 143 271 - -
Lele51g1058 317 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 139 246 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele51g1058 317 CDD MPN_AMSH_like 141 317 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lele51g1058 317 ProSiteProfiles MPN domain profile. 143 271 IPR037518 -
Lele51g1058 317 PANTHER AMSH-LIKE PROTEASE 62 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1058 Lele-ChrLele51 6787750 6792158 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1058 51 6787750 6792158 Lele53g0962 53 19206025 19210097 CCT
Lele51g1058 51 6787750 6792158 Lele55g0512 55 3269334 3274614 CCT
Lele51g1058 51 6787750 6792158 Lele56g0498 56 3633640 3639483 CCT
Lele51g1058 51 6787750 6792158 Lele51g1058 51 6787750 6792158 ECH
Lele49g1040 49 6667148 6676133 Lele51g1058 51 6787750 6792158 hybridization
Lele50g1131 50 7455996 7457215 Lele51g1058 51 6787750 6792158 hybridization