Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1040 ATGGATCAGCATGGTTTATTTGGTGCTGTTTGCGCCATTAGCACTCACTGTACTTCGCTCTTCGTACATAATTCAAGAATTGCATTTTGCTTCATCGTTCGTGATTCTCTTAACTCCAGACTTTTCCGTATTCAGCTTCTTCATCATCAGGCAAGCTCATCGTCCTTCGATCATTATCATGCTTCTTGTTTTGCTCTCTAGGTAACTGGTGTCAAGGTAATATCATACTTATTCCTTGTCAATATAAAGAAAGCCTTTCCCTGCCTCCTTACCCACAGCATAATGAGCACTGATGAAAAAGTAGCTGGGATTTCATCTTCCAAAATTGTAGATTCAAGGAGTAGTTGGTGTCAGCTGGAAATTTGTTGTCCTTTTCCTATGAAGCAAGCTAGCCAATACTCCATAGTCCATAAAGCTACTCAGTGTTCACCTTCTCCTGTACTCTCTTTTGTGGAGAGAGAGCCTCAAGATACAGAAACTTCTCATGTAACAGCTGTTGATTCAGAACATGGATGCCCAAAGTCAGCAAATGAGTCAACTTCATCTAAGAGCATGCGAGATGTACATATCTCAATGAGGTTAATGGAGGACTTTCTTGAGCTTGCTAAAGAAAATACAGAGAAGGATCTGGAAACATGTGGTATACTAGGGGCCTTTCTTGCAAAGGGAACCCTCTACATGACCACTCTGATTATACCAAAACAGGAATCAACTTCCAGTTCTTGTCAGGCTACAAACGAGGAGGAAGTTTTTGCAATTCTAAATGAAAGATCCCTTTTACCTGTGGGATGGATTCATACCCATCCTTCTCAAAATTGTTTCATGTCATCAGTGGATCTGCACACTCAATATTCTTATCAGGTAATGGTTCCTGAGGCTTTTGCCATTGTCGTGGCTCCTAAAGATACCTTAAGGAGCTGTGGACTGTTTCGGGTAACTGACCCTGATGGAATGAGTATTCTAAAAGGTTGCCCAGAGACAGGATTTCATCCACACTCAGAACCAGACAACGGGAGTCCCATGTATGAGCAATGCTCCAATGTCTACAAGAACTCCAATCTGAGGTTTGAAATCTTTGACTTGCGCTGA 1089 0.4178 MDQHGLFGAVCAISTHCTSLFVHNSRIAFCFIVRDSLNSRLFRIQLLHHQASSSSFDHYHASCFALXVTGVKVISYLFLVNIKKAFPCLLTHSIMSTDEKVAGISSSKIVDSRSSWCQLEICCPFPMKQASQYSIVHKATQCSPSPVLSFVEREPQDTETSHVTAVDSEHGCPKSANESTSSKSMRDVHISMRLMEDFLELAKENTEKDLETCGILGAFLAKGTLYMTTLIIPKQESTSSSCQATNEEEVFAILNERSLLPVGWIHTHPSQNCFMSSVDLHTQYSYQVMVPEAFAIVVAPKDTLRSCGLFRVTDPDGMSILKGCPETGFHPHSEPDNGSPMYEQCSNVYKNSNLRFEIFDLR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1040 362 MobiDBLite consensus disorder prediction 158 180 - -
Lele49g1040 362 CDD MPN_AMSH_like 186 362 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lele49g1040 362 PANTHER AMSH-LIKE PROTEASE 105 362 - -
Lele49g1040 362 SUPERFAMILY JAB1/MPN domain 188 316 - -
Lele49g1040 362 FunFam AMSH-like ubiquitin thioesterase 2 168 362 - -
Lele49g1040 362 ProSiteProfiles MPN domain profile. 188 318 IPR037518 -
Lele49g1040 362 Gene3D Cytidine Deaminase, domain 2 165 362 - -
Lele49g1040 362 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 184 291 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele49g1040 362 SMART pad1_6 187 315 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1040 Lele-ChrLele49 6667148 6676133 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1040 49 6667148 6676133 Lele53g0962 53 19206025 19210097 CCT
Lele49g1040 49 6667148 6676133 Lele55g0512 55 3269334 3274614 CCT
Lele49g1040 49 6667148 6676133 Lele56g0498 56 3633640 3639483 CCT
Lele49g1040 49 6667148 6676133 Lele49g1040 49 6667148 6676133 ECH
Lele49g1040 49 6667148 6676133 Lele51g1058 51 6787750 6792158 hybridization
Lele49g1040 49 6667148 6676133 Lele52g1097 52 7388838 7394931 hybridization