Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0939 ATGGAGTTCCATCCTCCTGAAATCCTCCAAGCTAGGTTTTCAGATTCTGTTCTTGGCGGGGTATCCTTTGGCGGCGCTTCAACGACTTCACAAATGCCGGTTTCGGAGGGAGCTCTAACTGAGTCTTCACCGTCTTCGAATTCTGGGAGTCTTGATGACCGTTCTTTGGTTCCATATGTACCAAATCAGGTGGGGGTTTCGGCGTCTTTATCCAGTGAGGCCCAAGAGGAGCGGATCAATGCGTCTTTATCATCCAATATAAGTGTATCTCATCCCTATTCAGGTCCCCAAACCCTAGACGAGTGTTCACCTTCCGCATCAGTAGAAATCTCGGCGCCTTTGGTGCCTCAGTCATCAACTCCTGACGAGTCGTCACTGCCCATCGCAACGTCTGCCGAGAATAATTATTACCTCCCACTCTGTGATTCTGGTAGGGAAGATCGAGATGATGTTCCAGAGCCAATTCGATCGGTAAGCGATTTATCATATTATCCGGCTTTATCATCTCCCAAGCAGTGGCCTTCGTGGCCCTCATCTTCGCAGCTTCCCCCTAAAGGAAATAGGAATTCCAAGCTTACTTCCGATGAAATCTTGGCCCCATCTGAAGATACTGGCACGCCTCTGAACAATGGGTTTAATGTATCCGGAATTATACCCTTCACGGTGGGTGCTGGCCTTGAAAATCTTGGCAATACATGCTTTTTCAATGTTATCTTGCAATGCCTTACACATACTGTGCCACTAATTCAGGGTCTTTGTACTTGCAGTCATACTGCACCTCATGAAAGTAGTCTTGATGGATTCTGTGTTCTTTGTGTTCTTCGTGATCACATTGAACTTTCGTTGAAGTCTTCTGGAAGAATTATCTCACCTTGGAAACTTGTTGACAATTTGAATTATTTTTCTTCTTTTTTTACAAGATACCAGCAGGAGGATGCCCATGAATTCTTGCAGTGCTTCCTAGATAAACTAGAACGATGCTTTCTAGATTTAAAGAGAAATAGCAAGAGCTTTGAACAAGTTGACAATCTAGTGGAGAAAATATTTGGAGGTCGCCTTATCAGCAAACTTCAATGTTGTAACTGTGGCCACTGTTCAGACACTTATGAGCCTCTCATTGACTTTAGCTTGGAGATAGAAAATGTGGACAGCCTTCCAAGTGCTTTAGCGTCTTTCACTAAGGTAGAAAAGATAGATGCTACATTTACATGTGATAGCTGCAAGGAAGCAGTGTCCATGGAGAAGAGGCTTATTTTGGATCAGACACCTTCTGTTGCAGCATTTCATTTAAAGAGATTTAAGACCGATGGGATATATGTTGAAAAGATTGATAATCATGTGGATTTTCCTCTAGAATTGGACTTGCAGCCATATACTAATTGTAATGAGAGCAATAATGAAGCACTGAAGTATGACCTGTATGCCATTGTTGTGCATGTTGGGTTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTCCGCACTTCACCTGACATGTGGTATAGGTTGGATGACTCCAAGGTTGCTAGAGTTACAGGAGATTTTGTGCTGTCTCAGGAAGCATATATATTACTCTATGCTCGACAGGGCACACCATGGCTATCTACTATAATGGACGCTTCAATCTCATGCTTGGCCCCCAGTGTTTTTAATACTTCTCCAAAGTCAGTTTTAGACAATGTTGATGGCTTGTATCGCCCTAATCCTAATGTGGCAGATTTTGCAAGTGGTGGTGCAAATGAACCCCAAGGAATTTCCCAGCAGATGCTTGGTTATTCTGGTGGAGGATTGAATGAAATCCTCAATTATTATATGGATACTTATCTTGAAGCTGGACAAGTTCAGTTTGAGTTAAATCCAACTACTGTTAATTCTAATGGCTCTAAAGAAGAAACCACCCATGTCCAAGTACCATGCAATGAGAGAAATGGTTCGCTGCCCTCACTTGACGAAAAAGGTCATCAGGAGGCTGTTGATATTAGAGAGAATGATGTTTTCCATCCTTTAACCCCACCCAGCTCCCCAGGCCCAGATTCTAATTCTCCAGATATTAATTGCCGCATCCCACGGGATCATTTGAAGATGGAGAATCATGAGAGGTGTAAAAGACCATTAAATAAGACTGGGGAGGATTCTGAGAGGAAAGCAGCTATGAGATATCTTAGCAAGAATGTGCATAGTTCGAGGAGATCAAAACTCCTGGGTGCCATGGCTGGACCCTCCCATGAAAGTCATTCTATCAAAAAGAGGAAGAAATTGGGTTCTCAACTATGTAAGAAATCCATACCTTCTGGGGACCGTAAGAAATCAAATCATGGTTCTGTCATGTGTGCTTCAAGATAA 2343 0.4289 MEFHPPEILQARFSDSVLGGVSFGGASTTSQMPVSEGALTESSPSSNSGSLDDRSLVPYVPNQVGVSASLSSEAQEERINASLSSNISVSHPYSGPQTLDECSPSASVEISAPLVPQSSTPDESSLPIATSAENNYYLPLCDSGREDRDDVPEPIRSVSDLSYYPALSSPKQWPSWPSSSQLPPKGNRNSKLTSDEILAPSEDTGTPLNNGFNVSGIIPFTVGAGLENLGNTCFFNVILQCLTHTVPLIQGLCTCSHTAPHESSLDGFCVLCVLRDHIELSLKSSGRIISPWKLVDNLNYFSSFFTRYQQEDAHEFLQCFLDKLERCFLDLKRNSKSFEQVDNLVEKIFGGRLISKLQCCNCGHCSDTYEPLIDFSLEIENVDSLPSALASFTKVEKIDATFTCDSCKEAVSMEKRLILDQTPSVAAFHLKRFKTDGIYVEKIDNHVDFPLELDLQPYTNCNESNNEALKYDLYAIVVHVGFSSTSGHYFCFVRTSPDMWYRLDDSKVARVTGDFVLSQEAYILLYARQGTPWLSTIMDASISCLAPSVFNTSPKSVLDNVDGLYRPNPNVADFASGGANEPQGISQQMLGYSGGGLNEILNYYMDTYLEAGQVQFELNPTTVNSNGSKEETTHVQVPCNERNGSLPSLDEKGHQEAVDIRENDVFHPLTPPSSPGPDSNSPDINCRIPRDHLKMENHERCKRPLNKTGEDSERKAAMRYLSKNVHSSRRSKLLGAMAGPSHESHSIKKRKKLGSQLCKKSIPSGDRKKSNHGSVMCASR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0939 780 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 471 489 IPR018200 GO:0004843|GO:0006511
Lele51g0939 780 MobiDBLite consensus disorder prediction 665 687 - -
Lele51g0939 780 MobiDBLite consensus disorder prediction 86 106 - -
Lele51g0939 780 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 224 529 IPR028889 -
Lele51g0939 780 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 225 240 IPR018200 GO:0004843|GO:0006511
Lele51g0939 780 MobiDBLite consensus disorder prediction 168 192 - -
Lele51g0939 780 MobiDBLite consensus disorder prediction 27 57 - -
Lele51g0939 780 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 116 529 - -
Lele51g0939 780 MobiDBLite consensus disorder prediction 620 643 - -
Lele51g0939 780 FunFam Ubiquitin carboxyl-terminal hydrolase 20 220 532 - -
Lele51g0939 780 MobiDBLite consensus disorder prediction 620 653 - -
Lele51g0939 780 MobiDBLite consensus disorder prediction 736 780 - -
Lele51g0939 780 Pfam Ubiquitin carboxyl-terminal hydrolase 225 526 IPR001394 GO:0004843|GO:0016579
Lele51g0939 780 MobiDBLite consensus disorder prediction 27 53 - -
Lele51g0939 780 Gene3D Cysteine proteinases 223 531 - -
Lele51g0939 780 SUPERFAMILY Cysteine proteinases 220 528 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0939 Lele-ChrLele51 5864135 5867681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0939 185 559 Miscellaneous Gene Families AT4G31670 34.375 1.71e-52 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0939 51 5864135 5867681 Lele51g0939 51 5864135 5867681 ECH
Lele49g0922 49 5767893 5771472 Lele51g0939 51 5864135 5867681 hybridization
Lele50g0979 50 6195152 6199112 Lele51g0939 51 5864135 5867681 hybridization