Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0777 ATGAGCTGTTTTTGCTTGAAGAAGATTAGACAAAAGGCAAAGCTTGAACAATACATCATTCTTTCTTCAGAGACATGGTTCACAGTGAATGAAGTGGAGGCTTTGCTTGACTTGTTTAAAAAACTAAGCAGTTCAATTGTTGATGATGGCTTTATTCACAAGGAGGAGTTCCGGCTTGCACTTTTCCGAAACAGCAGGGAAGAGAATCTATTTGCGGATAGGGTGTTTGATATGTTTGATAATAAGCGTACTGGAAAAATTGACTTTGAGGAATTTGTCCGGTCACTGAGCATCTTTCATCCAAATGCTCCTACAGAGATGAAGATTGCATTTGCATTTAAATTGTTTGATCTTCGCAAGACCGGATACATTGAGCGTGTTGAGTTGAAGGAGATGGTCTTGGCTATTCTGGCTGAATCAGAACTAGAAGTTTCAGATGATGCTGCAGAAGCAATTGTGGACAAGACCTTAAAGGACGCAGACTCAAATGGCGATGGAAAGATCGACGAAGAGGAGTGGAAAGCATTCGTGGCAAAGTATCCGTCTCTTCTAAAGATGATGACTCTTTCATGTCTAAGGGATATAACCATGTCCTTCACTAGTTTCATAATGAAAACCCAGGTGGAAGACGAAGAGCACGAATAA 645 0.4062 MSCFCLKKIRQKAKLEQYIILSSETWFTVNEVEALLDLFKKLSSSIVDDGFIHKEEFRLALFRNSREENLFADRVFDMFDNKRTGKIDFEEFVRSLSIFHPNAPTEMKIAFAFKLFDLRKTGYIERVELKEMVLAILAESELEVSDDAAEAIVDKTLKDADSNGDGKIDEEEWKAFVAKYPSLLKMMTLSCLRDITMSFTSFIMKTQVEDEEHE 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0777 214 SUPERFAMILY EF-hand 22 193 IPR011992 -
Lele51g0777 214 SMART efh_1 108 136 IPR002048 GO:0005509
Lele51g0777 214 SMART efh_1 152 180 IPR002048 GO:0005509
Lele51g0777 214 SMART efh_1 71 99 IPR002048 GO:0005509
Lele51g0777 214 CDD EFh 108 178 IPR002048 GO:0005509
Lele51g0777 214 Pfam EF hand 73 94 IPR002048 GO:0005509
Lele51g0777 214 Gene3D - 20 211 - -
Lele51g0777 214 FunFam calcineurin B-like protein 3 17 210 - -
Lele51g0777 214 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lele51g0777 214 PANTHER CALCINEURIN B 3 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele51g0777 214 Pfam EF-hand domain pair 107 176 IPR002048 GO:0005509
Lele51g0777 214 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Lele51g0777 214 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lele51g0777 214 PRINTS Recoverin family signature 168 188 - -
Lele51g0777 214 PRINTS Recoverin family signature 75 96 - -
Lele51g0777 214 PRINTS Recoverin family signature 122 140 - -
Lele51g0777 214 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0777 Lele-ChrLele51 4689449 4692868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0777 1 210 EF-hand Containing Proteins AT5G55990 53.810 1.32e-82 243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0777 51 4689449 4692868 Lele51g0777 51 4689449 4692868 ECH
Lele49g0752 49 4566512 4570400 Lele51g0777 51 4689449 4692868 hybridization
Lele50g0795 50 4896976 4900076 Lele51g0777 51 4689449 4692868 hybridization