LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0752	ATGCCAACTTTTTCCTGGTTTCTTGTTTGCACTGACATTAATATGTCCGTTTACATGAGCTGTTTTTGCTTGAAGAAAATTAGACAAAAGGCAAAGCTTGAACAATACATCATTCTTTCTACAGAGACATGGTTCACAATTAATGAAGTGGAGGCTTTGCTTGACTTGTTTAAAAAACTAAGCAGTTCAATTGTTGATGATGGCCTTATTCACAAGGAGGAGTTCCAGCTTGCACTTTTCCGAAACAGCAGGGAAGAGAATCTATTTGCGGATAGGGTGTTTGATATGTTTGATACTAAGCGTACTGGAAAAATTGACTTTGAGGAATTTGTCCGGTCACTGAGCATCTTTCATCCAAATGCTCCTACAGAGATGAAGATTGCATTTGCATTTAAATTGTTTGATCTTCGCAAGACCGGATACATTGAGCGTGTTGAGTTGAAGGAGATGGTCTTGGCTATTCTGGCTGAATCAGAACTAGAAGTCTCAGATGATGTTGCAGAAGCAATCGTGGACAAGACCTTAAAGGACGCAGACTCAAATGGCGATGGAAAAATCGACGAAGAGGAGTGGAAAGCATTCGTGGCGAAGTATCCGTCTCTTCTAAGGATGATGACTCTTCCATGTCTAAGGGATATAACCATGTCCTTCACTAGTTTTATAATGAAAACCCAGGTGGAAGACGAAGAGCACGAATAA	699	0.4034	MPTFSWFLVCTDINMSVYMSCFCLKKIRQKAKLEQYIILSTETWFTINEVEALLDLFKKLSSSIVDDGLIHKEEFQLALFRNSREENLFADRVFDMFDTKRTGKIDFEEFVRSLSIFHPNAPTEMKIAFAFKLFDLRKTGYIERVELKEMVLAILAESELEVSDDVAEAIVDKTLKDADSNGDGKIDEEEWKAFVAKYPSLLRMMTLPCLRDITMSFTSFIMKTQVEDEEHE	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0752	232	Gene3D	-	38	229	-	-
	Lele49g0752	232	Pfam	EF-hand domain pair	125	194	IPR002048	GO:0005509
	Lele49g0752	232	SUPERFAMILY	EF-hand	39	215	IPR011992	-
	Lele49g0752	232	ProSiteProfiles	EF-hand calcium-binding domain profile.	166	201	IPR002048	GO:0005509
	Lele49g0752	232	Pfam	EF hand	91	112	IPR002048	GO:0005509
	Lele49g0752	232	PRINTS	Recoverin family signature	93	114	-	-
	Lele49g0752	232	PRINTS	Recoverin family signature	186	206	-	-
	Lele49g0752	232	PRINTS	Recoverin family signature	140	158	-	-
	Lele49g0752	232	ProSiteProfiles	EF-hand calcium-binding domain profile.	122	157	IPR002048	GO:0005509
	Lele49g0752	232	ProSitePatterns	EF-hand calcium-binding domain.	179	191	IPR018247	-
	Lele49g0752	232	SMART	efh_1	170	198	IPR002048	GO:0005509
	Lele49g0752	232	SMART	efh_1	126	154	IPR002048	GO:0005509
	Lele49g0752	232	SMART	efh_1	89	117	IPR002048	GO:0005509
	Lele49g0752	232	CDD	EFh	126	196	IPR002048	GO:0005509
	Lele49g0752	232	PANTHER	CALCINEURIN B	21	228	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Lele49g0752	232	ProSiteProfiles	EF-hand calcium-binding domain profile.	85	120	IPR002048	GO:0005509
	Lele49g0752	232	FunFam	calcineurin B-like protein 3	35	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0752	Lele-ChrLele49	4566512	4570400	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0752	9	228	EF-hand Containing Proteins	AT5G55990	53.182	2.34e-84	248

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0752	49	4566512	4570400	Lele49g0752	49	4566512	4570400	ECH
	Lele49g0752	49	4566512	4570400	Lele51g0777	51	4689449	4692868	hybridization