Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0795 ATGTCCATTTACATGAGCTGTTTTTGCTCGAAGAAGATTAGACAAAAGGCAAAGCTCGAACAATATATCATTCTTTCTTCAGAGACATGGTTCACAGTGAATGAAGTGGAGGCTTTGCTTGACTTGTTTAAAAAAATAAGTAGTTCAATTGTTGATGATGGCCTTATTCACAAGGAGGAGTTCCGGCTGGCCCTTTTCCAAAACAGCAGGGAAGAGAATCTATTTGCAGACATGGTGTTTGACATGTTTGATACTAAGGTTGCATTTAAATTGTTCGATCTTCGCAAGACCGGATACATCGAGCGCGTTGAGTTGAAGGAGATGGTCTTGGCCATTCTGGCTGAATCAGATCTAGAAGTTTCAGATGATGTTGCAGAAGCAATTGTGGACAAGACCTTAAAGGACGCAGACACAAATGGCGATGGAAAGATCGACGAAGAGGAATGGAAAGCATTCGTGGCAAAGTATCCGTCTCTGCTAAAGATGATGACTCTTCCATGTCTAAGGGATATAACCATGTCCTTCACCAGTTTCATAATGAAAACCCAGGTGGAAGACGAAAAACACGAATAA 573 0.4136 MSIYMSCFCSKKIRQKAKLEQYIILSSETWFTVNEVEALLDLFKKISSSIVDDGLIHKEEFRLALFQNSREENLFADMVFDMFDTKVAFKLFDLRKTGYIERVELKEMVLAILAESDLEVSDDVAEAIVDKTLKDADTNGDGKIDEEEWKAFVAKYPSLLKMMTLPCLRDITMSFTSFIMKTQVEDEKHE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0795 190 Gene3D - 24 86 - -
Lele50g0795 190 Gene3D - 87 187 - -
Lele50g0795 190 PANTHER CALCINEURIN B 5 86 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele50g0795 190 SUPERFAMILY EF-hand 26 173 IPR011992 -
Lele50g0795 190 CDD EFh 86 154 IPR002048 GO:0005509
Lele50g0795 190 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Lele50g0795 190 Pfam EF-hand domain pair 86 152 IPR002048 GO:0005509
Lele50g0795 190 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Lele50g0795 190 SMART efh_1 84 112 IPR002048 GO:0005509
Lele50g0795 190 SMART efh_1 128 156 IPR002048 GO:0005509
Lele50g0795 190 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0795 Lele-ChrLele50 4896976 4900076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0795 5 186 EF-hand Containing Proteins AT4G17615 48.571 2.64e-64 195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0795 50 4896976 4900076 Lele50g0795 50 4896976 4900076 ECH
Lele50g0795 50 4896976 4900076 Lele51g0777 51 4689449 4692868 hybridization