Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0257 ATGGTATCCGAATCGGAGCTTATCGGCCGGCTCCGAGAGTTTCTTCGCTGCTCCGACCTCAACACTACCACCACTGCCACGGTCCGCCGCCAGTTGGAGGAGGATTTTGGAATCGATTTATCGGATAGGAAGGCGTTCATTAGGGAACAGGTCGACTTGTTCCTTCAAAGCGAGCGCGAGCAGCCCGAGGAACCGGAAGATGAAGAAGATCAAAAAGACGAACCTCAGCCGGAGCATGAATCAGAAGAAAGCGAAGATTCGGATGGTGAAATGCAAGACGATGAAGGAGATGAAGTTAAAGTAAAGCGTTCCAGGAATGGGAAGGACAAAGGACGATCTAAAAGTTCAGAAAGTGAGGTGCGAAGAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCGGGAATTCGTTGGAGCACCAGAAATGGCAAGGACTGAGGTTGTTAAGCAATTATGGGCATATATAAGGAAGAAGAATTTGCAAGATCCAAATAACAGGCGGAATATAATTTGTGATGAACCGTTACGGGTCCTTTTTGGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGCATTGTCCAAGCATATCTGGCCATTGGATTCTGATGATGTCATCCAGGTGAAGTCTGCACCAAAAGACAAGCAGAAGAAGCAAGAGAGAGAAGATCCGGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCTCTTAAACTGTCGGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGTGCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGTGATGAGAAGCTGAAAGAACTCTTCGATGTTGACTCCTTCAACGGTTTCACAGTTTCGAAGCTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 981 0.4444 MVSESELIGRLREFLRCSDLNTTTTATVRRQLEEDFGIDLSDRKAFIREQVDLFLQSEREQPEEPEDEEDQKDEPQPEHESEESEDSDGEMQDDEGDEVKVKRSRNGKDKGRSKSSESEVRRKGGGFCKLCSLSPQLREFVGAPEMARTEVVKQLWAYIRKKNLQDPNNRRNIICDEPLRVLFGVDSINMFQMNKALSKHIWPLDSDDVIQVKSAPKDKQKKQEREDPDEPKRKEKRQKGGKSGFLAPLKLSDALVNFLGTGENALSRADVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0257 326 MobiDBLite consensus disorder prediction 95 120 - -
Lele51g0257 326 Pfam SWIB/MDM2 domain 130 201 IPR003121 -
Lele51g0257 326 Pfam SWIB/MDM2 domain 248 321 IPR003121 -
Lele51g0257 326 MobiDBLite consensus disorder prediction 55 120 - -
Lele51g0257 326 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 206 - -
Lele51g0257 326 SUPERFAMILY DEK C-terminal domain 3 56 - -
Lele51g0257 326 ProSiteProfiles SWIB/MDM2 domain profile. 126 203 IPR003121 -
Lele51g0257 326 MobiDBLite consensus disorder prediction 213 245 - -
Lele51g0257 326 Gene3D SWIB/MDM2 domain 121 209 IPR036885 -
Lele51g0257 326 Gene3D SWIB/MDM2 domain 239 326 IPR036885 -
Lele51g0257 326 FunFam Upstream activation factor subunit 121 209 - -
Lele51g0257 326 Gene3D - 1 58 - -
Lele51g0257 326 MobiDBLite consensus disorder prediction 61 94 - -
Lele51g0257 326 SUPERFAMILY SWIB/MDM2 domain 242 324 IPR036885 -
Lele51g0257 326 ProSiteProfiles SWIB/MDM2 domain profile. 244 323 IPR003121 -
Lele51g0257 326 MobiDBLite consensus disorder prediction 213 241 - -
Lele51g0257 326 CDD SWIB-MDM2_like 249 321 - -
Lele51g0257 326 Pfam DEK C terminal domain 2 55 IPR014876 -
Lele51g0257 326 SMART swib_2 245 326 IPR019835 -
Lele51g0257 326 SMART swib_2 127 206 IPR019835 -
Lele51g0257 326 CDD SWIB-MDM2_like 131 201 - -
Lele51g0257 326 SUPERFAMILY SWIB/MDM2 domain 123 205 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0257 Lele-ChrLele51 1458071 1462506 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele51g0257 SWIB 1.5e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0247 49 1432063 1436493 Lele51g0257 51 1458071 1462506 hybridization
Lele50g0259 50 1503709 1508224 Lele51g0257 51 1458071 1462506 hybridization