Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1612 ATGGGTAGAACTTCTCTCAGTGTTCATTTTGCTTCTGTTGCATACCAAAAGAATTTGCAACTTCTGTACAAAGTTAGTGTTCATCTTATGCTGTTCTGTTACTGTATGAGACGATCCAAATCCAATAGCTTTGTTGACTTAGATTTGACTTCTGTTAATAGTGACAACCATTTTTCTTCAGATTCATCCTTATATCCAAGAAGTGCAGTGATTACTCAATATGCTTACCTTAGTTGCTTAAGGTCACATCCCTGTTCCCATTATCAAACCATGCTTACTTTTTACTGCAAAGAAATTGAGAAAACTGAACGTGCTTACCTTACCTCTGAACCTGCTTCTAATTTCTTGATAGCAGCTAGGGAAAAAAACTGTTTTATTCCTAAGAGATCTGAAGAAATGACTAAAGACGACGACTTTAAGCTCCTGAAAATCCAGACATGTGTTGTCAAAGTGAACATTCACTGTGATGGGTGTAAACAGAAAGTGAAGAAACTACTTCAGAAAATTGAAGGTGTTTATCAGGTTCAGTTAGATGCAGAACAACAGAAAGTGACAGTTTTAGGAAGTGTAGATTCTGCAACATTGATCAAGAAACTGGTGAGAGCTGGGAAATATGCAGAACTTTGGTCACATAAAACAAATCAGAACCAGAAGCAGAATAATAACAACATCAGCAATAATAACAACTGCGTGAAGAATAATTACAAGAACCAGAAGGGTCAAAAGCAGCAAGGACAGGTTAACAAGGGGCCTGAAGCGTTCAACAACAACCAGCAGAAGTTTAAATTCCCTGCTTTTAGTTCTGAAGAAGATGATGAGCTGTACGAAGACGACGATGAAGATGAAGACTTTGAAGATGATGATGATGGGCTAAGGTTCATCAGGGAGAAGGCTACTAATCAACTGGATTTGATCAAGCAGCAGCAAGCAGTTAGTTCTGCAAAGAAAAATGCAGGAGCCATGAATCCAGCAACTTCTTTCAACAATGGTGGCAAGGCAAACAATAGTAATGCCACTGGTGGCAAGAAAGTAAGCTTTGATCCAAAAGCCATGGCTGCTCTGAAAGTAAACAGTAATGCCAATCTGGGAGGTGAAAGTCAAAGTCTTGGAGAACAACCCAGAAGGGGCACAAATGACATAGGTTCTATGATGAGTCTTGTTGGTTTTAATGGAAATAACAATAATGCAAACCATTCTGGATTTGGAGGATTTCAAGTTCAGTCCAACCATGGAATCATTCCAAATGGTGGTTTTCTCACAAATCAGCAATACCCATCACCATCACCATCTTCATCTTCATCTTCTTTTCTGATGAACATGAATGATTTTAGTAATAATAATCATCCATCTTCATTGATGATGAACATGAAGCAACAACCACCCCAGATGATGTATCAGACGGCTCCATTTGTTCCTCCTAGCACTGGATATTACTGGAACAAAAGCTGCAACTATTATAATTATGATAATTACAGTGCAGCCATTCCCAGTTACTCTCATCTTCAGCTACCTAATTACTGTGGGGAAGATCACTATGCAGCTGATATGTTCAGTGATGGCAACACTAACATCAACTGCTCAGTTATGTAA 1590 0.3868 MGRTSLSVHFASVAYQKNLQLLYKVSVHLMLFCYCMRRSKSNSFVDLDLTSVNSDNHFSSDSSLYPRSAVITQYAYLSCLRSHPCSHYQTMLTFYCKEIEKTERAYLTSEPASNFLIAAREKNCFIPKRSEEMTKDDDFKLLKIQTCVVKVNIHCDGCKQKVKKLLQKIEGVYQVQLDAEQQKVTVLGSVDSATLIKKLVRAGKYAELWSHKTNQNQKQNNNNISNNNNCVKNNYKNQKGQKQQGQVNKGPEAFNNNQQKFKFPAFSSEEDDELYEDDDEDEDFEDDDDGLRFIREKATNQLDLIKQQQAVSSAKKNAGAMNPATSFNNGGKANNSNATGGKKVSFDPKAMAALKVNSNANLGGESQSLGEQPRRGTNDIGSMMSLVGFNGNNNNANHSGFGGFQVQSNHGIIPNGGFLTNQQYPSPSPSSSSSSFLMNMNDFSNNNHPSSLMMNMKQQPPQMMYQTAPFVPPSTGYYWNKSCNYYNYDNYSAAIPSYSHLQLPNYCGEDHYAADMFSDGNTNINCSVM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1612 529 MobiDBLite consensus disorder prediction 211 264 - -
Lele50g1612 529 Pfam Heavy-metal-associated domain 148 202 IPR006121 GO:0046872
Lele50g1612 529 CDD HMA 153 207 IPR006121 GO:0046872
Lele50g1612 529 MobiDBLite consensus disorder prediction 270 286 - -
Lele50g1612 529 ProSiteProfiles Heavy-metal-associated domain profile. 152 208 IPR006121 GO:0046872
Lele50g1612 529 Gene3D - 144 216 - -
Lele50g1612 529 SUPERFAMILY HMA, heavy metal-associated domain 145 210 IPR036163 GO:0046872
Lele50g1612 529 MobiDBLite consensus disorder prediction 211 286 - -
Lele50g1612 529 MobiDBLite consensus disorder prediction 361 382 - -
Lele50g1612 529 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 139 529 - -
Lele50g1612 529 Coils Coil 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1612 Lele-ChrLele50 21169392 21173991 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1612 50 21169392 21173991 Lele50g1612 50 21169392 21173991 ECH
Lele50g1612 50 21169392 21173991 Lele51g1240 51 8201933 8204004 hybridization
Lele50g1612 50 21169392 21173991 Lele52g1569 52 19572437 19573555 hybridization