Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1123 ATGCTTCAACAAATGGATCCAAAGGCTGAAGGAGAAATGGGGCTGACATTCACTAAGCTTTTCAGTCGGCTTTTTGCCAAGAAAGAAATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGCTCAAGCTTGGTGAGATTGTCACTACAATCCCTACTATTGGGTTCAATGTGGAGACTGTGGAATACAAAAACATTAGCTTCACTGTTTGGGATGTTGGGGGCCAAGATAAGATTCGTCCCCTGTGGAGGCATTACTTCCAGAACACACAGGGTCTTATATTTGTTGTAGACAGCAATGACAGAGATAGGGTTGTTGAGGCCAGAGATGAGTTACATAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTATTGCTTGTATTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGATAAACTGGGTCTCCACTCTCTTAGGCAGCGCCATTGGTACATCCAGAGCACCTGTGCTACCTCTGGGGAAGGCCTTTATGAGGGTCTGGATTGGCTCTCCAACAACATTGCCAACAAGGCTTAA 582 0.4433 MLQQMDPKAEGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1123 193 ProSiteProfiles small GTPase Arf family profile. 23 189 - -
Lele50g1123 193 PRINTS GTP-binding SAR1 protein signature 131 152 IPR006689 GO:0003924|GO:0005525
Lele50g1123 193 PRINTS GTP-binding SAR1 protein signature 59 83 IPR006689 GO:0003924|GO:0005525
Lele50g1123 193 PRINTS GTP-binding SAR1 protein signature 31 54 IPR006689 GO:0003924|GO:0005525
Lele50g1123 193 PRINTS GTP-binding SAR1 protein signature 86 111 IPR006689 GO:0003924|GO:0005525
Lele50g1123 193 PANTHER ADP RIBOSYLATION FACTOR-RELATED 13 188 IPR024156 GO:0005525
Lele50g1123 193 Gene3D - 16 193 IPR027417 -
Lele50g1123 193 FunFam ADP-ribosylation factor 1 13 193 - -
Lele50g1123 193 SMART rab_sub_5 30 192 - -
Lele50g1123 193 TIGRFAM small_GTP: small GTP-binding protein domain 28 169 IPR005225 GO:0005525
Lele50g1123 193 CDD Arf1_5_like 30 188 IPR045872 GO:0003924
Lele50g1123 193 SMART arf_sub_2 13 193 - -
Lele50g1123 193 SMART sar_sub_1 13 189 IPR006689 GO:0003924|GO:0005525
Lele50g1123 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 191 IPR027417 -
Lele50g1123 193 Pfam ADP-ribosylation factor family 17 189 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1123 Lele-ChrLele50 7383819 7388836 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1123 50 7383819 7388836 Lele50g1123 50 7383819 7388836 ECH
Lele50g1123 50 7383819 7388836 Lele51g1049 51 6724399 6731392 hybridization
Lele50g1123 50 7383819 7388836 Lele52g1086 52 7307218 7311070 hybridization