Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0779 ATGTTGAACTTGTTTTCTCTGAGGAGTCTGTCATGGCGTTCCCGTACTGGTGGTCAGGGAAAGGTTGAGCTAACTGCTGCAGAAGTAGAATCACTTCAATCAGAACTTGCAGATTTAGAAGAGAGGGAAGCTCACTTAAAAGCTCAGTTGGATCATATTGATGAAATTCTTCGGTCAGCTCGTCTATCTGGCTACATGTACATCAGGACGAGATGGACAGCGCTACCAGGAGATCCTCCGCCCATAGATGATTCCGATGTAAATGATTGGGTTCCTCGCTTTATTGTTCTCCATGGAGCATGTGTTTTCATATATTTGTCATGTTCAGATCTAGGTCCTCAAGACACCACTCCACTATCTGATATTACTGAAGTGGGGCTGCTTCCGAGTTTTAAATTGGAGGATGATGAGACACAATATGCCTTTTATATTTTATCTCGTTTAGGATTTCGATATGAGTGCTCAAGCAGTTCAAAGATACAGGTGGACTCCTGGTTGTCAGCTCTACGAACTGACTGCAAATTGGAGTTTAATACAGCAGTTCCCAATGGTTCAATCAAGAGCAAGCTCAATCCCTCCAAGATGAGCTCTCAAGTCTGCAGATCCGCTTCTAGAGCCGTGAGATCTTTTCTCTCTGCTTCCAAGGGCTCTCGCTTTTACTCCGAAGGAAGCACTGTAGCTGCTGCTGCTGCAGTTTCAATCACAAGGCAAGTACCTCTTTTTGCTTCAAACATTGGGAAGTCTGAATCCGGAAGTGGAGCCAGAGCATGGCTTTCAGGGGTTCTCGCTCTTCCTGCTGCAGCTTACTTGCTCCAAGATCAAGAGGCACATGCTGCTGAGCTGGAGCGCACTTTCATTGCCATTAAGCCCGATGGAGTCCAAAGAGGGCTGATTTCAGAGATCATATCTCGTTTTGAACGGAAAGGGTACAAACTCGTGGGAATTAAAGTAGTGATTCCTTCAAAAGATTTTGCACAGAAGCATTATCATGACCTGAAGGAAAGACCCTTCTTCAATGGCCTTTGTGAATTCCTAAGCTCTGGTCCTGTTATTGCAATGGTCTGGGAAGGGCAGGGAGTTATTTCCTATGGCCGAAAACTAATCGGGGCCACCGATCCACAGAAATCTGAGCCTGGCACTATCAGAGGTGATCTGGCTGTCGTTGTTGGAAGAAATATCATCCACGGGAGTGATGGACCACAGACTGCCAATGACGAAATTAACTTATGGTTTAAGCCAGAGGAGTTGGTAAAATACACGAGCAATGCAGAAACGTGGATTTACGGTGAAAACTGA 1296 0.4545 MLNLFSLRSLSWRSRTGGQGKVELTAAEVESLQSELADLEEREAHLKAQLDHIDEILRSARLSGYMYIRTRWTALPGDPPPIDDSDVNDWVPRFIVLHGACVFIYLSCSDLGPQDTTPLSDITEVGLLPSFKLEDDETQYAFYILSRLGFRYECSSSSKIQVDSWLSALRTDCKLEFNTAVPNGSIKSKLNPSKMSSQVCRSASRAVRSFLSASKGSRFYSEGSTVAAAAAVSITRQVPLFASNIGKSESGSGARAWLSGVLALPAAAYLLQDQEAHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKDFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPQTANDEINLWFKPEELVKYTSNAETWIYGEN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0779 431 FunFam Nucleoside diphosphate kinase 277 429 - -
Lele50g0779 431 Gene3D - 58 179 IPR011993 -
Lele50g0779 431 CDD NDPk_I 282 411 - -
Lele50g0779 431 PANTHER OS05G0595500 PROTEIN 1 412 - -
Lele50g0779 431 Coils Coil 22 56 - -
Lele50g0779 431 ProSitePatterns Nucleoside diphosphate kinases active site. 392 400 IPR023005 -
Lele50g0779 431 PRINTS Nucleoside diphosphate kinase signature 369 385 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 PRINTS Nucleoside diphosphate kinase signature 328 347 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 PRINTS Nucleoside diphosphate kinase signature 284 306 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 PRINTS Nucleoside diphosphate kinase signature 348 365 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 PRINTS Nucleoside diphosphate kinase signature 392 411 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 SUPERFAMILY Nucleoside diphosphate kinase, NDK 281 428 IPR036850 -
Lele50g0779 431 Hamap Nucleoside diphosphate kinase [ndk]. 281 416 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele50g0779 431 Pfam Nucleoside diphosphate kinase 282 415 IPR034907 -
Lele50g0779 431 Gene3D - 272 429 IPR036850 -
Lele50g0779 431 ProSiteProfiles PH domain profile. 59 174 IPR001849 -
Lele50g0779 431 SMART ndk_5 281 418 IPR034907 -
Lele50g0779 431 CDD PH 90 169 - -
Lele50g0779 431 SUPERFAMILY PH domain-like 53 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0779 Lele-ChrLele50 4804880 4811361 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0779 50 4804880 4811361 Lele50g0779 50 4804880 4811361 ECH
Lele50g0779 50 4804880 4811361 Lele51g0759 51 4601084 4603464 hybridization
Lele50g0779 50 4804880 4811361 Lele52g0766 52 4855300 4857757 hybridization