Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g1031 ATGAGAACGATTGTTAGATTCGATTTGCATGAAGTTGCTTTTTCTTTTGGGGATCCAAAGGCTGAAGGAGAAATGGGGTTGACATTCACTAAGCTTTTCAGTCGGCTTTTTGCCAAGAAAGAAATGCGAATTCTGATGGTTGGTCTTGATGCTGCCGGTAAGACTACTATTTTGTACAAGCTCAAGCTTGGTGAGATTGTCACTACAATCCCTACTATTGGATTCAATGTGGAGACTGTGGAATACAAAAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAAGATAAGATTCGTCCCCTTTGGAGGCATTACTTCCAGAACACACAGGGTCTTATTTTTGTTGTAGACAGCAATGACAGAGATAGGGTTGTTGAGGCCAGAGATGAGTTACACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTATTGCTTGTATTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATAACTGATAAGCTGGGTCTCCACTCTCTCAGGCAGCGCCACTGGTATATCCAGAGCACCTGTGCTACCTCTGGGGAAGGCCTTTATGAGGGTCTGGATTGGCTCTCCAACAACATTGCCAACAAGGCTTAA 618 0.4353 MRTIVRFDLHEVAFSFGDPKAEGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g1031 205 Gene3D - 28 205 IPR027417 -
Lele49g1031 205 TIGRFAM small_GTP: small GTP-binding protein domain 40 181 IPR005225 GO:0005525
Lele49g1031 205 Pfam ADP-ribosylation factor family 29 201 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 FunFam ADP-ribosylation factor 1 25 205 - -
Lele49g1031 205 PRINTS GTP-binding SAR1 protein signature 43 66 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 PRINTS GTP-binding SAR1 protein signature 143 164 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 PRINTS GTP-binding SAR1 protein signature 71 95 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 PRINTS GTP-binding SAR1 protein signature 98 123 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 203 IPR027417 -
Lele49g1031 205 SMART rab_sub_5 42 204 - -
Lele49g1031 205 ProSiteProfiles small GTPase Arf family profile. 35 201 - -
Lele49g1031 205 SMART arf_sub_2 25 205 - -
Lele49g1031 205 SMART sar_sub_1 25 201 IPR006689 GO:0003924|GO:0005525
Lele49g1031 205 PANTHER ADP RIBOSYLATION FACTOR-RELATED 25 200 IPR024156 GO:0005525
Lele49g1031 205 CDD Arf1_5_like 42 200 IPR045872 GO:0003924
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g1031 Lele-ChrLele49 6612469 6615733 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1031 49 6612469 6615733 Lele49g1031 49 6612469 6615733 ECH
Lele49g1031 49 6612469 6615733 Lele51g1049 51 6724399 6731392 hybridization
Lele49g1031 49 6612469 6615733 Lele52g1086 52 7307218 7311070 hybridization