LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele49g0878	ATGACTGCAGCAAAAGTGAGAGAAGCGAAGAGAAGGAGATGGAAGGAGGCTGAAGGGGATTTCCAAGGGGAGGAGGCAATGGTGCTCTTCAAGATGGGAGATAGAAAGGTGAGAAAGTGCGCCAATCAGCCTCTTCCCCATCGTTCTCGGTTGGGTGATTTGTCTCTCTCTTCTTCTAAATTCGGGGATCTAACCATGCGTTCCCACGATCCCAACCCATTTGACGAAGAAGAAGTGAATCCCTTCTCGAATGGTGCTGGTGCCCCTGGTTCAAAGTTACGTGTTCCTCCCGTGGTATCTGAGCCAATTGGCTTTGGTCAACGTTATGATGCTACGGTGGATATTCCATTAGAGAATACAAATGTCTCTAAGAAAAGGGAACAAGAGCTTGCAACTTGGGAAGCAGATCTAAAAAGGAGAGAGCAGGAAATCAAAAGAAGAGAAGATGCAGTTGCCAGATCTGGGGTTGTTGTTGACGATAAGAACTGGCCTCCATTTTTCCCAATCATTCACCATGACATAGCCAATGAGATACCTGCTCATGCCCAGAGGCTGCAATATTTGGCATTTGCAAGTTGGTTAGGGATTGTTCTCTGTCTGGCTTTTAATGTAGTTGCCGTGATGGTCTGTTGGGTTAGAGGCGGTGGTGTTAAAATTTTTTTCCTTGCGGTAATTTATGCTCTACTTGGAGTGCCCCTTTCATATGTACTTTGGTACAGGCCCCTTTACCGTGCTATGAGGACAGATAGTGCATTTAAGTTCGGTTGGTTTTTCCTGTTTTACATGCTGCATATTGCTTTTTGTGTCATTGCTGCGATTGCACCTCCGATTGTCTTTCATGGAAAATCATTAACGGGCATTCTTGCAGCAATTGATGTCTTCTCAGACCATGTGTTAGTTGGGATTTTCTATTTGGTTGGATTTGCCTTGTTTTGCTTGGAGACTCTTCTAAGCTTGTGGGTGCTTCAGAAAATTTACATGTATTTCAGGGGGAACAAGTGA	1002	0.4471	MTAAKVREAKRRRWKEAEGDFQGEEAMVLFKMGDRKVRKCANQPLPHRSRLGDLSLSSSKFGDLTMRSHDPNPFDEEEVNPFSNGAGAPGSKLRVPPVVSEPIGFGQRYDATVDIPLENTNVSKKREQELATWEADLKRREQEIKRREDAVARSGVVVDDKNWPPFFPIIHHDIANEIPAHAQRLQYLAFASWLGIVLCLAFNVVAVMVCWVRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYRAMRTDSAFKFGWFFLFYMLHIAFCVIAAIAPPIVFHGKSLTGILAAIDVFSDHVLVGIFYLVGFALFCLETLLSLWVLQKIYMYFRGNK	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele49g0878	333	Coils	Coil	123	150	-	-
	Lele49g0878	333	PANTHER	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP	69	332	IPR007273	GO:0015031\|GO:0016020
	Lele49g0878	333	Pfam	SCAMP family	161	331	IPR007273	GO:0015031\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele49g0878	Lele-ChrLele49	5419106	5430700	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele49g0878	67	333	Miscellaneous Gene Families	AT1G32050	72.862	2.60e-150	421

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0878	49	5419106	5430700	Lele49g0878	49	5419106	5430700	ECH
	Lele49g0878	49	5419106	5430700	Lele51g0895	51	5498046	5501743	hybridization
	Lele49g0878	49	5419106	5430700	Lele52g0895	52	5802915	5807994	hybridization