Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0738 ATGACTGAATTTATCTTCTTCACAGAAGGAAGCACTGTAGCTGCTGCCGCTGTTTCAATCACAAGGAAGGTACCTCTTTTTGCTTCAAACATTGGGAACTCTGAATCTGGAAGTGGAACCAGAGCATGGCTTTCAGGGGTTCTCGCTCTTCCTGCTGCAGCTTACTTGCTCCAAGATCAAGAGGCACATGCTGCTGAGCTGGAGCGCACTTTCATTGCCATTAAGCCCGATGGAGTTCAAAGAGGGCTGATTTCAGAGATCATATCTCGTTTTGAGCGGAAAGGGTACAAACTCGTGGGAATTAAAGTAGTGATTCCTTCAAAAGATTTTGCACAGAAGCATTACCATGACCTGAAGGAAAGACCCTTCTTCAATGGACTTTGTGAATTCCTAAGCTCTGGTCCTGTCATTGCAATGGTGTGGGAAGGGCAGGGAGTTATTTCCTATGGCCGAAAACTAATCGGGGCCACTGATCCACAGAAATCTGAGCCTGGCACCATCAGAGGTGATCTGGCTGTCGTTGTTGGAAGAAATATCATCCACGGGAGTGATGGACCAGGGACAGCCAAGGACGAAATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTAAATTACACGAGCAATGCAGAAAAGTGGATTTACGGTGAAAACTGA 654 0.4633 MTEFIFFTEGSTVAAAAVSITRKVPLFASNIGNSESGSGTRAWLSGVLALPAAAYLLQDQEAHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKDFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPGTAKDEIKLWFKPEELVNYTSNAEKWIYGEN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0738 217 ProSitePatterns Nucleoside diphosphate kinases active site. 178 186 IPR023005 -
Lele49g0738 217 CDD NDPk_I 68 197 - -
Lele49g0738 217 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 59 215 - -
Lele49g0738 217 FunFam Nucleoside diphosphate kinase 63 215 - -
Lele49g0738 217 Hamap Nucleoside diphosphate kinase [ndk]. 67 202 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele49g0738 217 Pfam Nucleoside diphosphate kinase 68 201 IPR034907 -
Lele49g0738 217 SUPERFAMILY Nucleoside diphosphate kinase, NDK 67 214 IPR036850 -
Lele49g0738 217 SMART ndk_5 67 204 IPR034907 -
Lele49g0738 217 Gene3D - 58 215 IPR036850 -
Lele49g0738 217 PRINTS Nucleoside diphosphate kinase signature 178 197 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele49g0738 217 PRINTS Nucleoside diphosphate kinase signature 155 171 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele49g0738 217 PRINTS Nucleoside diphosphate kinase signature 70 92 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele49g0738 217 PRINTS Nucleoside diphosphate kinase signature 114 133 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lele49g0738 217 PRINTS Nucleoside diphosphate kinase signature 134 151 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0738 Lele-ChrLele49 4492554 4493928 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0738 49 4492554 4493928 Lele49g0738 49 4492554 4493928 ECH
Lele49g0738 49 4492554 4493928 Lele51g0759 51 4601084 4603464 hybridization
Lele49g0738 49 4492554 4493928 Lele52g0766 52 4855300 4857757 hybridization