Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0162 ATGGTTCACAGTGCCTACGATTCTTTCCAACTCCTCGACAGTTGTCCTTCGAAGATCGAAGCTGTCGTATCTGACGGCTCTAAGCTCCTCCTGGGCTGCTCTGATGGCTCCCTCCGCATTTACGCTCCAGAATCATCCGATTCCGATCGGTCTCCGTCGGCCGATCAACACGCTCAGGAGCTGCGGAAGGAAGCCTACGTGCTCGAAAGAAACTTGAAGGGCTTTGCGAAGAAGCCTATCTTATCAATGGAGATCTTGGAATCCAGGGAACTGCTTCTTTCACTTTCCGAATCTATTGCTTTTCACCGTCTTCCTAATTTTGAAACCATAGCAGTTATCACAAAGGCCAAGGGCGCCAATGTGTTCTCCTGGGATGACCGAAGAGGTTTCTTATGCTTCGCGAGGCAAAGGAGGGTCTGTATTTTCAGACACGATGGTGGCAGAGGGTTTGTGGAGGTGAAAGAATTTGGTGTTCCAGATGTGGTGAAGTCGATGTCATGGTGCGGTGAAAATATCTGTCTGGGGATTAGAAGAGAATATGTAATACTGAATGCTACAAACGGTGCGTTGTCTGAGGTATTTCCTTCTGGGAGACTAGCGCCGCCTTTAGTAGTCTCTCTACCTTCGGGGGAGCTTCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGACCAAAACGGGAAACTTCTTCCAGAAGGCAGGATTTGTTGGTCAGAGGCTCCTGCAGAAGTTGTAATCCGGAAACCATATGGAATAGCCCTGCTGCCAAGATTTGTAGAGGTTCGATCCCTTCGAGATCCTTTTCCACTTATACAGACTGTTGTTCTTCGAAATGTTCGTCATCTTCACCAAAGCAGCAATTCTGTTATTCTTGCATTAGATAATTCTGTTCACGGACTCTTCTCTGTTCCTCTTGGAGCCCAGATTGTTCAATTAACAGCATCTGGAGACTTTGAAGAAGCTCTGTCATTGTGCAAACTCCTTCCACCTGAAGACTCAAATCTCCGTGCTGCAAAGGAAGGTTCAATCCATATAAGATATGCTCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCAATGGAACATTTTCTTTCATCTCAAGTAGATATAACGTATGTTCTTTCTCTGTATCCATCCATTATTCTTCCCAAGACAACCATTGTTACTGAGCCAGAGAAGTTGGGAGACATTTCCTTGGACGCATCTTATCTCTCCAGAGATTCTTCAGGTCTGTCAGATGATATGGAAATCCCACCACCACCACCTCCTTTGTCAGAATCTGATGCAGCACTTGAATCCAAAAAGACGAGTCATAATATGCTTATGGCTCTCGTAAAGTTTTTGCAGAAAAAGAGATATAGTGTTATTGAGAAGGCCACTGCTGAGGGGACAGAGGAGGTTGTTTTAGATGCAGTGGGGGACAACCTAATATCCTATAACAGCAGTAGGTTTAAGAAAACAAACAAGGGGCGTGGTAGTGTTCCTGTTAGTTCAGGAGCTAGGGAGATGGCTTCAGTGTTGGATACTGCACTTCTCCAAGCATTGCTTCTTACTGGACAATCTTCCTCTGCTCTAGAACTTTTGAGAGTTCCGAACTACTGTGATTTGAAGATATGTGAAAAGATACTACGTAAAGGCAGCAATAATGTTGCTTTACTAGAACTTTACAAGTGCAATTCAATGCACCGAGAAGCTCTTGAGCTCCTTCATCAGTTGGTGGAGGAGTCAAAGTCAAACCCATCCGAAGTTACGCATAAGTTAAAGCCTGAGGCAATAATTGAGTATCTCAAGCCTCTGTGTAATTCAGACCCCATGCTTGTTCTGGAGTACTCAATGCTTGTTCTTGAGAGCTGTCCAACACAAACTATTGAGCTTTTTCTCTCTGGAAATATTCCTGCAGATATGGTGAACTCCTATTTGAAGCAACATTATCCAAATATGCAGACTACTTACTTGGAACTCATGCTTGCAATGAATGAGAGTGCTGTCTCTGGAAATTTGCAAAATGAAATGGTACAAATCTATCTTTCTGAAGTACTTGAGTGGCACGCTGATTTAAGTGCTCAACAGAAATGGGATGAGAAAGCTTTCTCCCCGACAAGGAAGAAATTATTGTCTGCTTTAGAGAGTATATCAGGATTCAATCCGGAAGCTCTATTGAAACGTCTTCCACCAGATGCTCTATATGAGGAGCGGTCTATACTGTTGGGTAAAATGAACCTACATGAATTGGCACTGTCTTTATATGTTCATAAGCTTCATGTTCCAGAATCAGCATTGTCTTATTGTGATCGGGTTTATGAATCTTCAAACAATCCATCAGGAAAATCTCCCAGCAACATATACCTAACTCTTCTGCAAATCTATTTAAATCCACAAGGGACAACCAACAATTTTGAAAAGAGAATCAGGAATCTATTATCTACCCAGAATACAAGCATTCCAAAGGTTAGCCATATGACATCAATAAAATCTAAAGCAGGCCGAGGAAGTAAAAAGATTGCAGCAATAGAAGGTGCAGAGGACACAAAAGTTAATTTGAGCAGCACGGATAGTAGCCGGAGTGATGGTGATCTGGATGAAATTAGTGAGGAAGGTGGTAGTACTATCATGCTTGACGAAGTCCTTGATTTGTTGAGTCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTCAAACTTTTACCAAGAGAAACTAAACTGCAGAACTTGCGTCCATTTCTTGGACCTCTTGTGCGAAAATCTAGTGAAATGTACCGTAATTACTCAGTGATCAAGAGCTTGAGACAAAGCGAGAACCTTCAGGTGAAAGATGAACTCTATAATCAGAGGAAAGCAGCTGTGAAGATAACCGGTGACAGCGTGTGTTCACTTTGCCATAAGAAGTTAGGGACTAGTGTATTTGCAGTCTACCCCAACGGAAAAACTCTTGTGCACTTTGTCTGTTTCCGGGATTCTCAGAGCATGAAAGCTGTGGCCAAAGGGTCGTCGTTGAGGAAGCGGATATAG 3012 0.4329 MVHSAYDSFQLLDSCPSKIEAVVSDGSKLLLGCSDGSLRIYAPESSDSDRSPSADQHAQELRKEAYVLERNLKGFAKKPILSMEILESRELLLSLSESIAFHRLPNFETIAVITKAKGANVFSWDDRRGFLCFARQRRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGIRREYVILNATNGALSEVFPSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLPEGRICWSEAPAEVVIRKPYGIALLPRFVEVRSLRDPFPLIQTVVLRNVRHLHQSSNSVILALDNSVHGLFSVPLGAQIVQLTASGDFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFENGSYEEAMEHFLSSQVDITYVLSLYPSIILPKTTIVTEPEKLGDISLDASYLSRDSSGLSDDMEIPPPPPPLSESDAALESKKTSHNMLMALVKFLQKKRYSVIEKATAEGTEEVVLDAVGDNLISYNSSRFKKTNKGRGSVPVSSGAREMASVLDTALLQALLLTGQSSSALELLRVPNYCDLKICEKILRKGSNNVALLELYKCNSMHREALELLHQLVEESKSNPSEVTHKLKPEAIIEYLKPLCNSDPMLVLEYSMLVLESCPTQTIELFLSGNIPADMVNSYLKQHYPNMQTTYLELMLAMNESAVSGNLQNEMVQIYLSEVLEWHADLSAQQKWDEKAFSPTRKKLLSALESISGFNPEALLKRLPPDALYEERSILLGKMNLHELALSLYVHKLHVPESALSYCDRVYESSNNPSGKSPSNIYLTLLQIYLNPQGTTNNFEKRIRNLLSTQNTSIPKVSHMTSIKSKAGRGSKKIAAIEGAEDTKVNLSSTDSSRSDGDLDEISEEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQNLRPFLGPLVRKSSEMYRNYSVIKSLRQSENLQVKDELYNQRKAAVKITGDSVCSLCHKKLGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSSLRKRI 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0162 1003 Pfam Vacuolar sorting protein 39 domain 1 508 616 IPR019452 -
Lele49g0162 1003 ProSiteProfiles Citron homology (CNH) domain profile. 16 289 IPR001180 -
Lele49g0162 1003 MobiDBLite consensus disorder prediction 409 431 - -
Lele49g0162 1003 Pfam Region in Clathrin and VPS 636 772 IPR000547 GO:0006886|GO:0016192
Lele49g0162 1003 Pfam CNH domain 26 284 IPR001180 -
Lele49g0162 1003 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 611 798 IPR000547 GO:0006886|GO:0016192
Lele49g0162 1003 Pfam Vacuolar sorting protein 39 domain 2 877 985 IPR019453 -
Lele49g0162 1003 PANTHER CNH DOMAIN CONTAINING 1 990 IPR032914 GO:0016192
Lele49g0162 1003 SUPERFAMILY WD40 repeat-like 22 179 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0162 Lele-ChrLele49 982590 989189 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0162 49 982590 989189 Lele51g0177 51 1014832 1019290 hybridization
Lele49g0162 49 982590 989189 Lele52g0180 52 1076229 1078180 hybridization