Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1308 ATGTCTCAGGTGGTGGCCACGCGCTCCATTCACAGCTCCTTCCTTTGCCCCAACCCTGGATCTGCACAGCCCAGAGCTGAAAACTTGTTAAAGCCTTCCACTTTTGCTTTCAATATCTTCTCACCTAAGAAGACTTCCAAACTTGGTTTTCGTAGAAGGTCATGCCAGATCGTTGCAAGGAAAGCTGCTATTTCAGCTACTGAAGTAGTTCCCGTATCACCCGAGGATGATTTGAAGATTGAGGAGCAGTTGCGTGTAATCCCGCAATTCGGTGACACTTCAGCTGGTATGTGGGCGAAGCCCACGGTTAGACGGAAGACGAAGATAGTTTGTACGATTGGTCCTTCTACTAATACTCGGGAAATGATCTGGAAGCTTGCTGAGGCTGGCATGAATGTTGCTCGCCTCAATATGTCTCATGGGGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAGTATAATGCACAATCTAAGGATAATGTGATCTCGATTATGCTTGACACCAAGGGCCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCATGTTGACGCCTGGTCAGGAATTCACTTTTACAATTCAGAGGGGTGTTGGAACTCCCGACTGTGTCAGTGTGAACTACGATGATTTTGTCAATGATGTGGAAGTTGGGGACATGCTTCTTGTTGATGGTGGTATGATGTCATTGATGGTTAAATCAAAGACGGCTGATTCAGTGAAATGTGAAGTTGTTGATGGAGGCGAGCTCAAATCAAGGCGACATTTGAATGTTCGAGGAAAAAGTGCTACGCTGCCTTCCATTACTGAGAAGGACTGGGATGACATCAAATTTGGAGTGGATAACCAAGTTGACTTTTATGCTGTTTCCTTTGTTAAGGATGCTCAAGTTGTTCACGAATTGAAGAATTATTTAAAAAGCTGTGGTGCTGATATACATGTCATCGTGAAGATTGAAAGTGCAGACTCTATACCAAACTTACACTCAATTATTTCAGCTTCTGATGGGGCAATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTTCCTATTGAGGAGGTTCCACTTTTGCAGGAAGAGATAATCAATATTTGCCGTAGCATGGGGAAGGCCGTTATAGTAGCAACTAATATGCTTGAAAGCATGATTGTACACCCTACACCAACCAGAGCAGAAGTATCAGATATTGCAATTGCTGTTCGTGAAGGTTCTGATGGAATTATGCTTTCTGGAGAAACTGCTCATGGAAAGTTCCCACTGAAAGCTGTGAAAGTAATGCACACAGTAGCTTTACGGACAGAAGCAACCATTCCAGGTGGTCAAATGCCACCTAATCTTGGCCAAGTATTCAAGAAGCACATGAGTGAGATGTTTGCATACCATGCGACAATGATGTCTAATACCCTTGGAACCTCTACTGTAGTCTTTACTAGATCAGGTTTTATGGCTATCCTACTGAGCCACTATCGACCTTCTGGGACTATCTTTGCTTTTACTGATAATAAGAGGATACAACAGCGGCTGGCTTTGTATCAAGGGGTGTGTCCCATATATATGGAATTTTCTGACAATGCGGAGGAGACTTTCACCAGAGCGCTAGGTTTACTCCAGAAGCAAGGAATGGTAAAGAAAGGAGAAGAAGTGGCCCTTGTACAGAGTGGCAAGCAACCCATATGGAGGTCCCAGTCCACTCACAACATCCAGGTCCGGCAAGTGTAA 1725 0.4446 MSQVVATRSIHSSFLCPNPGSAQPRAENLLKPSTFAFNIFSPKKTSKLGFRRRSCQIVARKAAISATEVVPVSPEDDLKIEEQLRVIPQFGDTSAGMWAKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVISIMLDTKGPEVRSGDLPQPIMLTPGQEFTFTIQRGVGTPDCVSVNYDDFVNDVEVGDMLLVDGGMMSLMVKSKTADSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNQVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEEIINICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNLGQVFKKHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDNKRIQQRLALYQGVCPIYMEFSDNAEETFTRALGLLQKQGMVKKGEEVALVQSGKQPIWRSQSTHNIQVRQV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1308 574 Gene3D - 447 574 IPR036918 -
Lele48g1308 574 ProSitePatterns Pyruvate kinase active site signature. 315 327 IPR018209 GO:0004743|GO:0006096
Lele48g1308 574 FunFam Pyruvate kinase 175 268 - -
Lele48g1308 574 SUPERFAMILY PK beta-barrel domain-like 174 265 IPR011037 -
Lele48g1308 574 TIGRFAM pyruv_kin: pyruvate kinase 105 574 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PANTHER PYRUVATE KINASE 96 552 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 SUPERFAMILY PK C-terminal domain-like 423 574 IPR036918 -
Lele48g1308 574 Gene3D - 107 432 IPR040442 -
Lele48g1308 574 FunFam Pyruvate kinase 270 435 - -
Lele48g1308 574 PRINTS Pyruvate kinase family signature 394 412 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 287 301 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 344 368 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 317 343 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 163 179 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 369 393 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 PRINTS Pyruvate kinase family signature 413 429 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele48g1308 574 FunFam Pyruvate kinase 436 555 - -
Lele48g1308 574 Pfam Pyruvate kinase, alpha/beta domain 462 555 IPR015795 -
Lele48g1308 574 Gene3D - 175 268 IPR015806 GO:0004743|GO:0006096
Lele48g1308 574 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 100 439 IPR015813 GO:0003824
Lele48g1308 574 Pfam Pyruvate kinase, barrel domain 105 440 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1308 Lele-ChrLele48 17312388 17316898 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1308 48 17312388 17316898 Lele48g1308 48 17312388 17316898 ECH
Lele45g0124 45 1155135 1160079 Lele48g1308 48 17312388 17316898 hybridization
Lele46g0148 46 889400 894283 Lele48g1308 48 17312388 17316898 hybridization