Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1180 ATGTCTAGACCTGCTGGGTTTATGGTGCTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGCGACGGGTCTATTGTTGCTTTTACTGTTCTTCACAATGTGAACTGCAATCATGGTCTCATATATGTTAACTCACAGGGTGTTTTAAAGATCTGCCAGCTGCCTTCTGGCTCAAGCTATGATAGCTACTGGCCTGTACAGAAAGTGGGAAGCTCTTCTTCAGAGTCTAAGTACCTTTTTCATATAAAAAATTTAATTTTACACCATCTTCGATTTGACTATCAAGTAACCTACTTTGCAGAGAAGAATTTGTATCCGCTTATAGTCTCAGTTCCTGTCAACCAACAAACTGAGAATCAAAATCTAAGCTCTGATGAGCAAAACCGCTTTTACACTATTGATGAATTTGAGATTCGGATTATGGAGCCAGATAAATCTGGTGGCCCTTGGCTAACAAAAGGAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGAATGGTTACACTGCTGAATACAGAAACAAAAGAGAATGAAACGCGTTTAGCTATTGGCACTGCTTATGTGCAAGGAGAGGATGTTTCTGCAAGAGGGCGTGTCCTTCTGTTTTCTTTGGGAAAAAACACAGATAATAGTCAACCTCTGGTTTCAGAGGTCTACTCAAAAGAGTTAAAAGGTGCTATATCTGCTTTAGCCTCACTGCAAGGCCATCTATTAATAGCTTCTGGTCCAAAAATTATTCTCCCCAAGTGGACTGGTAGTGAACTGAATGGTATTGCATTTTTTGAGGCTCCACCATTGCATGCTGTGAGCTTAAACATTGTAAGTGGTATTCTCTCAGATCCTTTATTATTGGTCAAAAACTTCATACTTATTGGTGACATCCATAAAAGCGTTTACTTCCTTAATTGGAAGGAACAGGGTGCGCAACTTAGCTTATTAGCCAAGGACTTTGGTTCTCTTGATTGTTTTGCAACCGAGTTTTTGATTGATGGAAGCACTCTGAGTCTCATGGTTTCCGATGATCAAAAGAACATCCAGATTTTTTACTATGCACCCAAGATGTCTGAAAACTGGAAGGGACAGAAGCTTCTTTCAAGGGCTGAATTTCACGTTGGAGCACATGTGACAAAATTCTTGCGTTTGCAGATGCTGCCCACTGCCTCTTCTGACCGAACTGGCACTGGTCCGGGCTCAGATAAAACAAATCGTTTTGCTTTATTATTTGGTACCCTGGATGACAGTATCGGTTGCATTGCGCCACTGGATGAAATCACATTTCGGAGGCTGCAATCTTTGCAGAAAAAGCTTGTTGATGCTGTACCTCATGTTGCTGGCTTAAATCCAAAAGCTTTCAGGCAGTTTCTTTCCAATGGAAAGGCCCATCGACCAGGCCCTGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCATCAGATCAGGAAAACCTTAATTCCAAGGTTTAGCCGAGTTCCTGACAATTCAAGTCAAGCAAGAAATCTTGACACTGAACCACTAGAAGCTCTGTCACAAATTGCATTTGAGCTTGTTCAATTTGATCTCTTATGCAACCAAGAGGGAAATCCTTTCACCACCAATCAATGGATGCCACCATTAATGTGTAAATTTGTGCCTTTGATGGCTGAAATTTCTTCTGGTTTGGTGAGTGTGGAAAAAGACATTGAGTGA 1734 0.4129 MSRPAGFMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVNSQGVLKICQLPSGSSYDSYWPVQKVGSSSSESKYLFHIKNLILHHLRFDYQVTYFAEKNLYPLIVSVPVNQQTENQNLSSDEQNRFYTIDEFEIRIMEPDKSGGPWLTKGTIPMQSSENALTVRMVTLLNTETKENETRLAIGTAYVQGEDVSARGRVLLFSLGKNTDNSQPLVSEVYSKELKGAISALASLQGHLLIASGPKIILPKWTGSELNGIAFFEAPPLHAVSLNIVSGILSDPLLLVKNFILIGDIHKSVYFLNWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSENWKGQKLLSRAEFHVGAHVTKFLRLQMLPTASSDRTGTGPGSDKTNRFALLFGTLDDSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPKAFRQFLSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQIRKTLIPRFSRVPDNSSQARNLDTEPLEALSQIAFELVQFDLLCNQEGNPFTTNQWMPPLMCKFVPLMAEISSGLVSVEKDIE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1180 577 Gene3D - 23 423 IPR015943 GO:0005515
Lele48g1180 577 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 15 498 - -
Lele48g1180 577 Pfam CPSF A subunit region 136 481 IPR004871 GO:0003676|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1180 Lele-ChrLele48 16314185 16325350 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1180 48 16314185 16325350 Lele48g1180 48 16314185 16325350 ECH
Lele45g0269 45 2181504 2193878 Lele48g1180 48 16314185 16325350 hybridization
Lele46g0292 46 1917901 1936736 Lele48g1180 48 16314185 16325350 hybridization