Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1173 ATGCTCCAAAACGAAACCCACTGTCAACTTGGTGCACTTACCACAAGCTCAACTTCATATGAGAGCCCCGTCCTCACCTTGAATCTCAGAGAACCAGAGAAGCACAATATCAACATCAATTCCAGCTCCTTTTGTGCAATGACTTCCACCAACTCAACATCCACTGACCCGCTTCCTTCCGCCGTGGTCGCGGTCGAGGACATCGCCATCAAGGCTGTGAACAAGCGCTACGAAGGCTTGGTCACTGTGCGGAACAAAGCCTTAAAGGGCAAAGGAGCTTGGTACTGGGCACACTTGGAGCCTATTCTGATTCGGAACTCCGATTCTGGCCTTCCCAAATCCGTGAAGCTCAAATGTTCCTTATGTGATTCCGTTTTCTCTGCTTCAAACCCATCGAGAACTGCTTCGGAGCACTTGAAGAGAGGAACATGCCCCAATTTCAGCTCTGGTTTGAGACCCAATTCTTCAATTTCGGCTATGCCCATATCTACTGTGGCTTTGCCTAATTCAAACAACCACCACAACAAAAAGAGAAGCTCTTCTCACATGGCTGTTACTTCTCCTTATCAAAATCATTCCTTAGCGTTGGTTGAGTCCTCTCGATTTTGTAGCGAACTGGGATATTCACCAACCCAACTTAACACGGGGACAAATCAACAACATTTGATTTTGTCGGGTGGGAAGGAAGATTTATGTGCATTAGCCATGTTTGAAGATAGTGTGAAGAGACTCAAGAGTCCCAAGACCTCTCCTTGTCCTGCTTTGAGCAGGGAACAGATTAACTTTGCTCTAGAATTGCTCGCCGATTGGTTCTACGAGTCATGTGGTTCTGTGCCTTTATCAACCCTTGAGCACCCCAAGTTTCAAGCCTTTCTCAACCAAGTGGGTCTGCCAACAAATTTGCGTCGTGAGATATCGGGTCCTCGACTTGACGCCAAGTTCAATGAGACTGAGATTGAGTCAGAAGCCAAAATAAGAGATGCAATGTTTTTCCAAGTAGCTAGTGAAGGTTGGAAGAACAATAATTGGTATAGCTTGTGTTGTGGAGGTGACAATTTGGTTAAGTTTACTGTGAATCTTCCGAATGGAGCTAGTGTGTTCCAAAAGGCTGTCTTTAGCGGGGGAGTTGTGTCTCCCAAATATGCAGAGGAGATTTTGTGGGAAACAATCACGAGTATAAGTGGAAGTTCTTTGCAGAGATGTGCGGGAATTGTAGCGGACAAATATAAGACCAACGCATTAAGGAACTTGGAGATTCAAAATCATTGGATGGTAAATATCCCTTGTCAGCTTCAGGGCTTCATTAGTTTAATCAAGGATTTTAACAACGACCTCCCACTTTTCAGGGTTGTCACTGAAAATTGCTTAAAGCTTGCAAATTTTGTAAACAATGAATCCCATGTCAGGAATAGTTTTCTCAAGTTCCGGATGCAGGAGCTTGAGTATTCTGGGTTGCTTCGTGTTCCTTCGCCTAAATGTGATCCTCTTAAGAACTTTGCATCTGTCTTTCCTATGTTGGAGGACATCTTGAGCTGTGCTAGAGTGATCCAAATGGTTACGTTGGAGAACTCGTTTAAGGTAACATGCATGGAGGATCCACTGGCGAGGGAAGTTGCTGAAATGACTCAAAGTGATAGGTTTTGGAATGAATTGGAGGCAGTTTATTCACTTGTAAAACTTATCAAAGGAATGGTTCGTGACATGGAGTCTGAGAGGCCACTGATTGGTCGATGCCTTCCTCTTTGGGAGGAGCTGAGAACCAAAGTGAAGGGGTGGTGTGCAAAATTTAGCATAGTGGAAGGACCTGTGGAGAAAATACTTGAAAAAGGTTTCAGAAAAAATTATCACCCTGCATGGTCAGCTGCATTTATTCTCGACCCACTCTACTTGATTAAAGATACAAGTGGAAAGTACCTTCCCCCATTCAAATGCTTGACACGTGAACAAGAGAAAGATATAGATAAGCTATTGACAAGGCTAGCTTCTAAAGAAGAAGCTCATATTGTGTTAATGGAGCTCATGAAGTGGAGGTCAGATGGGCTGGACCCACTTTATGCTCAGGCTGTTCAGATGAAACAAAAGGATCCAGTGACTGGGAAGATGAAAGTTGCAAACCCACTGAGTAGTAGACTTGTTTGGGAAACTTGCTTAAGTGAGTTTAAATCCCTTGGGAAGATTGCAGTAAGGCTTATTTTTCTCCATGCAACCTCGTGCGGATTGAAGAGCAATTGTTCTTTAATGAGAAAAATTGCTGGGAATAAGCACTCAAGAATTGCATTGGAAAGAGCTCAGAAAATGATATACATTGCCGGTCATGCCAAGCTTGAAAGGCGAGACATTTCGAATGAGGAAGAAAAGGATGCAGAAGTTTTTGCCATGACAGGTAGTGAGGATGGCATGCTGGCTGAGGTCTTTGCTGATGCACCCTTAGTATAA 2436 0.4388 MLQNETHCQLGALTTSSTSYESPVLTLNLREPEKHNININSSSFCAMTSTNSTSTDPLPSAVVAVEDIAIKAVNKRYEGLVTVRNKALKGKGAWYWAHLEPILIRNSDSGLPKSVKLKCSLCDSVFSASNPSRTASEHLKRGTCPNFSSGLRPNSSISAMPISTVALPNSNNHHNKKRSSSHMAVTSPYQNHSLALVESSRFCSELGYSPTQLNTGTNQQHLILSGGKEDLCALAMFEDSVKRLKSPKTSPCPALSREQINFALELLADWFYESCGSVPLSTLEHPKFQAFLNQVGLPTNLRREISGPRLDAKFNETEIESEAKIRDAMFFQVASEGWKNNNWYSLCCGGDNLVKFTVNLPNGASVFQKAVFSGGVVSPKYAEEILWETITSISGSSLQRCAGIVADKYKTNALRNLEIQNHWMVNIPCQLQGFISLIKDFNNDLPLFRVVTENCLKLANFVNNESHVRNSFLKFRMQELEYSGLLRVPSPKCDPLKNFASVFPMLEDILSCARVIQMVTLENSFKVTCMEDPLAREVAEMTQSDRFWNELEAVYSLVKLIKGMVRDMESERPLIGRCLPLWEELRTKVKGWCAKFSIVEGPVEKILEKGFRKNYHPAWSAAFILDPLYLIKDTSGKYLPPFKCLTREQEKDIDKLLTRLASKEEAHIVLMELMKWRSDGLDPLYAQAVQMKQKDPVTGKMKVANPLSSRLVWETCLSEFKSLGKIAVRLIFLHATSCGLKSNCSLMRKIAGNKHSRIALERAQKMIYIAGHAKLERRDISNEEEKDAEVFAMTGSEDGMLAEVFADAPLV 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1173 811 Coils Coil 646 666 - -
Lele48g1173 811 PANTHER OSJNBA0013A04.12 PROTEIN 73 777 - -
Lele48g1173 811 SUPERFAMILY Ribonuclease H-like 380 770 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1173 Lele-ChrLele48 16268320 16270755 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1110 47 16733490 16735925 Lele48g1173 48 16268320 16270755 ECH
Lele48g1173 48 16268320 16270755 Lele48g1173 48 16268320 16270755 ECH
Lele45g0276 45 2250543 2252978 Lele48g1173 48 16268320 16270755 hybridization
Lele46g0300 46 1990160 1992607 Lele48g1173 48 16268320 16270755 hybridization