Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1163 ATGTCTCGGATATTCTCGAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTGCAGAGACTCGGTTCGCTGTACCTGCAAGAAGTGGTCATAAATGGACAAGGTTCAATTTCCGACTCAATCAGGTTTGCCCAATCTCGACTCACTTAAATTATTTTCCCATCGCCACCCATAGACGACGGGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGTGGCTCCGTCGAGACCCGCAATAGGAATTCTCAGGCCCGAAAGATTCGAGCCGATGCTAATTGCCCACGGTGCGCCAGGAACATGGATGTATTTTTCTCCAACCGCCATTTTCCCAATTCTACTTCTGATTCCAATTTGATTCCTCCGGCTTTTCTTCATGAAGGAGGAGGTTATCAAACTATGAATCTCTGCCCCAATTGTAAAACAGCTTATTTCTTCCATCCTTTTGGAACTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTGGGGTCATAGATAATAAAGTTAATAATACTAGTGATAAATTGCAGAAGAGGATATCCAATGGCAAAGTCAAAGATGACAGAGGAAGTAATAATAGTCATGGCAGTAACGGTGGAGCAGAAGATTATGCCCATAGAAGTAACAGCAATAATGGGCTTAGAGCGACCTTTTGGCATACCTTAAGATCCTATAGTGATGGAAATGGTGGAGAACCACCAGAAACTTGGTCTCCCCCACCTGGTTCTACTAATGGGAATGGGATTGCTGTGCATACTCCTCCAGGCCCGCCTTTTGCACCTGGTGTTAATGTTGTTCGGGCTTCAGGGCCACGGGAGGGTGGTTCAGGTGGCGGAGGCGGCGGCAATGGAGAAAAGACAACATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAGGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCATTACAGAAAGGGTCAGGGGCAGATTCAGCGAATCCAAAAACTCTAGATAATGACGATAGTGTGGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCCACAGGTTCAGGGAAGACGTTGCTTGCAAAAACTCTAGCTCGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTACAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCCGAAAGCTTAAATATTAGTCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCACTACTGAAAATGTTAGAAGGAACAATAGTGAATGTCCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATACAGATTGACACGAAGGATATTCTTTTTATATGTGGTGGGGCATTCGTTGATCTTGAGAAAACAATATCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCTCCAGTTCGTGCAAATATGAGAACTAATAGAGTAATAAATGTTGAAGTAACATCAGCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCCGAGTTTATCGGACGGTTTCCAATCTTAGTTAGTTTATCCGCCTTAACAGAAGATCAACTTGTCCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAAGCTTCATTTCACCGAGAAAGCACTGAGATTGATTGCCCAGAAAGCGATGGCCAAGAACACTGGCGCCAGAGGTTTAAGAGCTATACTGGAAAACATCCTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGACTGGAAGTGATCAGATTGATGCGGTAGTGGTGGACGAGGAGTCCGTAGGATCAGTAGATGCTGCAGGACGTGGAGGCAAGATTCTTTGTGGACAAGGTGCTTTGGAGGCTTACCTTGCGAAGACCAAGGACTCAGTGGTCAATAGTGAGGTGGCTGAATCAGATGTACAAGAGGGGGAAACAGAGAGAGCCATGAGCATATGA 2154 0.4443 MSRIFSRWKKVKEMAMISSAETRFAVPARSGHKWTRFNFRLNQVCPISTHLNYFPIATHRRRESFINVQERYKWDHGGSVETRNRNSQARKIRADANCPRCARNMDVFFSNRHFPNSTSDSNLIPPAFLHEGGGYQTMNLCPNCKTAYFFHPFGTAPIQGTFVEIGGVIDNKVNNTSDKLQKRISNGKVKDDRGSNNSHGSNGGAEDYAHRSNSNNGLRATFWHTLRSYSDGNGGEPPETWSPPPGSTNGNGIAVHTPPGPPFAPGVNVVRASGPREGGSGGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKRVLSVAVYNHYKRIHHASLQKGSGADSANPKTLDNDDSVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTNRVINVEVTSALLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFTEKALRLIAQKAMAKNTGARGLRAILENILTDAMFEIPDVKTGSDQIDAVVVDEESVGSVDAAGRGGKILCGQGALEAYLAKTKDSVVNSEVAESDVQEGETERAMSI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1163 717 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 296 574 - -
Lele48g1163 717 SMART AAA_5 365 543 IPR003593 -
Lele48g1163 717 CDD AAA 366 477 - -
Lele48g1163 717 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 575 674 - -
Lele48g1163 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 661 IPR027417 -
Lele48g1163 717 MobiDBLite consensus disorder prediction 229 251 - -
Lele48g1163 717 Gene3D - 575 674 - -
Lele48g1163 717 Gene3D - 296 574 IPR027417 -
Lele48g1163 717 Pfam AAA domain (Cdc48 subfamily) 365 569 IPR003959 GO:0005524|GO:0016887
Lele48g1163 717 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 299 667 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Lele48g1163 717 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 94 694 - -
Lele48g1163 717 SMART ClpB_D2_small_2 576 669 IPR019489 -
Lele48g1163 717 MobiDBLite consensus disorder prediction 196 213 - -
Lele48g1163 717 Pfam C-terminal, D2-small domain, of ClpB protein 576 646 IPR019489 -
Lele48g1163 717 MobiDBLite consensus disorder prediction 179 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1163 Lele-ChrLele48 16208814 16214010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g1163 369 468 Miscellaneous Gene Families AT3G02450 36.634 7.31e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1163 48 16208814 16214010 Lele48g1163 48 16208814 16214010 ECH
Lele45g0287 45 2319259 2324311 Lele48g1163 48 16208814 16214010 hybridization
Lele46g0310 46 2054966 2067700 Lele48g1163 48 16208814 16214010 hybridization