Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0310 ATGGAGATTGGAAAGAGAACGAGTACAGAAGCGGACGAGCTTAAAAGCATAGAACTGGGTTTGGGAATGGCCGAGGCCGGTGAGGTAGCCTTGGAGTTGCTTGAGATGACAAAAATGGTTGCTTTGCAAGGAGTGAGAAAGCATGCTCATCCAGATTCATCTGATCATGCATCATCTGAATTATCTATGTCTCGGATATTCTCGAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTCCAGAGACTCAGTCCGCTGTCTCTGCAAGAAGTGGTCATAAATGGACAAGGTTCAATTTCCGACTCAATCAGGTTTGCCCAATCTCGACTCACTTAAATTATTTTCCCATCGCCACCCATAGACGACGGGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGTGGCTCCGGCGAGACCCGCAATCGGAATTCTCAGGCCCGAAAGATTCGAGCCGATGCTAATTGCCCACGGTGCGCCAGGAACATGGATGTATTTTTCTCCAACCGCCATTTTCCCAATTCTACTTCTGATTCCAATTTGATTCCTCCGGCTCCTCTTCATGAAGGAGGAGGTTATCAAACTATGAATCTCTGCCCCAATTGTAAAACAGCTTATTTCTTCCGCCCTTTTGGAACTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTGGGGTCATAGATAATAAAGTTAATAATATTAGTAATAAATTGCAGAAGAGGATATCCAATGGCAAAGTCAAAGATGACAGAGAAAGTAAAAATAGTCATGGCAGTAACGGTGTAGCAGAAGATTATGCCCATAGAAGTAACAGCAATAATGGGCTTGGAGCGACCTTTTGGCATACATTAAGATCCTATAGTGATGGAAATGGTGGAGAACCACCAGAAACTTGGTCTCCCCCACCTGGTTCTACTAATGGGAATGGGATTGCTGTGCATACTCCTCCAGACCCGCCTTTTGCACCTGGTGTTAATGTTGTTCGGGCTTCAGGGCCACGGGAGGGTGGTTCAGGTGGTGGAGGCGGCGGTAATGGAGAAAAGACAGCATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCATTACAGAAAGGGTCAGGGGCAGATTCAGCGAATCCAAAAACTCTAGATAATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACAGGTTCAGGGAAGACGTTGCTTGCAAAAACTCTAGCTCGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTACAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAATATTAGTCGGGATGTTTCCGGTGAGGGTGTTCAGCAGGCATTACTGAAAATGTTGGAAGGAACAATAGTGAATGTCCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATACAGATTGACACGAAGGATATTCTTTTTATATGTGGTGGGGCATTCGTTGATCTTGAGAAAACAATATCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCTCCAGTTCGTGCAAATATGAGAACCAATAGAGTAATAAATGTTGAAGTAACATCAGCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATTTGGTCTCATACCCGAGTTTATCGGACGGTTTCCAATCTTAGTTAGTTTATCCGCCTTAACAGAAGATCAACTTGTACAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAACCTTCATTTCACGGAGAAGGCACTGAGATTGATTGCGCAGAAAGCGATGGCCAAGAACACTGGCGCCAGGGGTTTAAGAGCTATACTGGAAAACATCCTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGACTGGAAGTGATCAGATTGATGCGGTAGTGGTGGACGAGGAGTCAGTAGGATCAGTAGATGCTGCAGGACGTGGAGGCAAAATTCTTCGTGGACAAGGTGCTTTGGAGGCTTACCTTGCGAAGACCAAGGACTCAGTGGTCAATGGTGAGGTGGCTGAATCAGATGTACAAGAGGGGGAAACAGAGAGCGCCATGAGCATGTGA 2340 0.4457 MEIGKRTSTEADELKSIELGLGMAEAGEVALELLEMTKMVALQGVRKHAHPDSSDHASSELSMSRIFSRWKKVKEMAMISSPETQSAVSARSGHKWTRFNFRLNQVCPISTHLNYFPIATHRRRESFINVQERYKWDHGGSGETRNRNSQARKIRADANCPRCARNMDVFFSNRHFPNSTSDSNLIPPAPLHEGGGYQTMNLCPNCKTAYFFRPFGTAPIQGTFVEIGGVIDNKVNNISNKLQKRISNGKVKDDRESKNSHGSNGVAEDYAHRSNSNNGLGATFWHTLRSYSDGNGGEPPETWSPPPGSTNGNGIAVHTPPDPPFAPGVNVVRASGPREGGSGGGGGGNGEKTAWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASLQKGSGADSANPKTLDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTNRVINVEVTSALLESVESSDLIAFGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLIGMNNVNLHFTEKALRLIAQKAMAKNTGARGLRAILENILTDAMFEIPDVKTGSDQIDAVVVDEESVGSVDAAGRGGKILRGQGALEAYLAKTKDSVVNGEVAESDVQEGETESAMSM 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0310 779 SMART AAA_5 427 605 IPR003593 -
Lele46g0310 779 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 358 636 - -
Lele46g0310 779 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 361 729 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Lele46g0310 779 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 637 736 - -
Lele46g0310 779 MobiDBLite consensus disorder prediction 246 262 - -
Lele46g0310 779 MobiDBLite consensus disorder prediction 290 364 - -
Lele46g0310 779 Gene3D - 637 736 - -
Lele46g0310 779 Pfam C-terminal, D2-small domain, of ClpB protein 638 708 IPR019489 -
Lele46g0310 779 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 155 756 - -
Lele46g0310 779 Pfam AAA domain (Cdc48 subfamily) 427 631 IPR003959 GO:0005524|GO:0016887
Lele46g0310 779 Gene3D - 358 636 IPR027417 -
Lele46g0310 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 723 IPR027417 -
Lele46g0310 779 MobiDBLite consensus disorder prediction 246 277 - -
Lele46g0310 779 CDD AAA 428 539 - -
Lele46g0310 779 SMART ClpB_D2_small_2 638 731 IPR019489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0310 Lele-ChrLele46 2054966 2067700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0310 431 530 Miscellaneous Gene Families AT3G02450 36.634 7.87e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0310 46 2054966 2067700 Lele46g0310 46 2054966 2067700 ECH
Lele46g0310 46 2054966 2067700 Lele47g1101 47 16660185 16665339 hybridization
Lele46g0310 46 2054966 2067700 Lele48g1163 48 16208814 16214010 hybridization