LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele45g0287	ATGTCTCGGATATTCTCAAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTGCAGAGAATCAGCTCGCTGTCTCTGCAAGAAGTGGTCATAAATGGACGAGGTTCAATTTCCGACTCAATCAGTTTTGCCCAATCACGACTCACTTAAATTGTTTTCCCATAGCCACCCATAGACGACGGGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGCGGCTCCGGCGACACCCGCAATCGGAATTCTCAGGCCCGAAAGATTCGAGCCGATGCTAATTGCCCACGGTGCGCCAGGAACATGGATGTATTTTTCTCCAACCGCCATTTTCCCAATTCTACTTCTGATTCCAATTTGATTCCTCCGGCTCCTCTTCATGAAGGAGGAGGTTATCAAACTATGAATCTCTGCCCCAATTGTAAAACAGCTTATTTCTTCCGCCCTTTTGGAATTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTAGGGTCATAGATGATGAAGTTAATAATACTAGTAATACATTACAGAAGAGGATATCCAATGGCAAAGTCAAAGAGGACAGAGAAAGTAATAATAGTCATGGTAGTAACGTTGTAGCAGAAGATTATGCCCATAGAAGTAACAGTAATAATGGGCTTAGAGCGACCTTTTGGCATACCTTAAGATCCTATAGTGATGGAGATGGTGGAGAACCACCAGAAACTTGGTCTCCCCCACCCGGTTCTTCTAATGGGAATGGGATTGCTGTGCATACTCCTCCAGGCCCGCCTTTTGCACCTGGTGTTAATGTTGTTCGGGTTTCAGGGCCACGGGAGGGTGGAGGCGGTGGTGGTAATGGAGAAAAGACAACATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCGTTACAGAAAGGGTCAGGGCCAGATTCAACGAGTCCAAAAACTCTAGATAATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACAGGTTCAGGGAAGACATTGCTGGCAAAAACTCTAGCACGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACGCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAGGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAATATTAGTCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCACTACTGAAAATGTTGGAAGGAACAATAGTGAATGTCCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATACAGATTGACACGAAGGATATTCTTTTTATATGTGGTGGAGCATTCGTTGATCTTGAGAAAACAATATCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCTCCAGTTCGTGCAAATATGAGAATCAATAGAGTAATAAATGTTGAAGTAACATCAGCTTTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGTATACGGTCTCATACCTGAGTTTATTGGACGGTTTCCAATCTTACTTAGTTTATCCGCCTTAACAGAAGATCAACTTGTGCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAAGCTTCATTTCATGGAGAAGGCACTGAGATTGATTGCACAGAAAGCAATGGCCAAGAACACTGGCGCCAGGGGTTTAAGAGCTATACTGGAAAACATCCTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGACCGGAAGTAATCGGATTGATGCAGTAGTCGTCGATGAGGAGTCAGTAGGATCAGTAGATGCCGCAGGACGTGGAGGCAAAATTCTTCGTGGGCATGGTGCTTTGGAGGCTTACCTTGCAAAGACCAAGGACTCAGTGGTCAACGGTGAGGGAGCTGAATCAGATGTACAAGAGGGGGAAACAGAGAGAGCCATGAGCATGTGA	2145	0.442	MSRIFSRWKKVKEMAMISSAENQLAVSARSGHKWTRFNFRLNQFCPITTHLNCFPIATHRRRESFINVQERYKWDHGGSGDTRNRNSQARKIRADANCPRCARNMDVFFSNRHFPNSTSDSNLIPPAPLHEGGGYQTMNLCPNCKTAYFFRPFGIAPIQGTFVEIGRVIDDEVNNTSNTLQKRISNGKVKEDRESNNSHGSNVVAEDYAHRSNSNNGLRATFWHTLRSYSDGDGGEPPETWSPPPGSSNGNGIAVHTPPGPPFAPGVNVVRVSGPREGGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASLQKGSGPDSTSPKTLDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRINRVINVEVTSALLESVESSDLIVYGLIPEFIGRFPILLSLSALTEDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFMEKALRLIAQKAMAKNTGARGLRAILENILTDAMFEIPDVKTGSNRIDAVVVDEESVGSVDAAGRGGKILRGHGALEAYLAKTKDSVVNGEGAESDVQEGETERAMSM	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele45g0287	714	FunFam	ATP-dependent Clp protease ATP-binding subunit ClpX	572	671	-	-
	Lele45g0287	714	Pfam	AAA domain (Cdc48 subfamily)	362	566	IPR003959	GO:0005524\|GO:0016887
	Lele45g0287	714	CDD	AAA	363	474	-	-
	Lele45g0287	714	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	298	658	IPR027417	-
	Lele45g0287	714	Gene3D	-	293	571	IPR027417	-
	Lele45g0287	714	MobiDBLite	consensus disorder prediction	180	209	-	-
	Lele45g0287	714	TIGRFAM	clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX	296	663	IPR004487	GO:0005524\|GO:0006457\|GO:0051082\|GO:0140662
	Lele45g0287	714	MobiDBLite	consensus disorder prediction	229	296	-	-
	Lele45g0287	714	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	94	691	-	-
	Lele45g0287	714	Pfam	C-terminal, D2-small domain, of ClpB protein	573	643	IPR019489	-
	Lele45g0287	714	SMART	ClpB_D2_small_2	573	666	IPR019489	-
	Lele45g0287	714	FunFam	CLP protease regulatory subunit CLPX3 mitochondrial	293	571	-	-
	Lele45g0287	714	SMART	AAA_5	362	625	IPR003593	-
	Lele45g0287	714	Gene3D	-	572	671	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele45g0287	Lele-ChrLele45	2319259	2324311	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele45g0287	366	465	Miscellaneous Gene Families	AT3G02450	36.634	7.14e-06	47.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele45g0287	45	2319259	2324311	Lele45g0287	45	2319259	2324311	ECH
	Lele45g0287	45	2319259	2324311	Lele47g1101	47	16660185	16665339	hybridization
	Lele45g0287	45	2319259	2324311	Lele48g1163	48	16208814	16214010	hybridization