Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0510 ATGGATGAAGATGCTATCATAACCTTATCTAATGTTTTGAGCGGAATGGTATTGAGAATCGGAGTAAAGGAGAAGGAGATGGCTTCCTCTGTGCTTTCTTCCGCCGCCGTCACCACCGTCACTCCCGTCCAGACCAACAAGGTCGCCGCCTTCACCGGTCTCAAGTCCGGCGCCTTGCCCGTGAGCAAGAAGATCAACACCGACATTACCTCCATTGCTAGCAATGGTGGGAGAGTAAGCTGCATGAAGGTGTGGCCCCCATTGGGCAAGAAGAAGTTTGAGACTCTCTCCTACCTCCCACCTCTCTCCCGTGAATCTTTGTTGAAGGAAGTTGAGTACCTTCTGAGAAGCGGATGGATTCCTTGCTTGGAGTTCGAAGTAAAGGACGCATTTGTGCGCCGTGAGAACAACAGGTCACCAGGGTACTATGACGGAAGATACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACAGACGCCACCCAGGTCTTGGGTGAGGTCGATGAGGCCGTAAAGGAGTACCCTTATAGTCACGTCAGAATCATCGGATTCGACAACACTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTACAAGCCACCAGGAAGCGAAGGCGCCTAA 624 0.5224 MDEDAIITLSNVLSGMVLRIGVKEKEMASSVLSSAAVTTVTPVQTNKVAAFTGLKSGALPVSKKINTDITSIASNGGRVSCMKVWPPLGKKKFETLSYLPPLSRESLLKEVEYLLRSGWIPCLEFEVKDAFVRRENNRSPGYYDGRYWTMWKLPMFGCTDATQVLGEVDEAVKEYPYSHVRIIGFDNTRQVQCISFIAYKPPGSEGA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0510 207 CDD RuBisCO_small 91 201 IPR000894 -
Lele48g0510 207 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 27 202 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 141 170 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 175 201 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 119 134 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 91 117 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 70 88 IPR024681 -
Lele48g0510 207 PRINTS RuBisCO small subunit signature 44 61 IPR024681 -
Lele48g0510 207 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 28 68 IPR024680 -
Lele48g0510 207 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 91 202 IPR000894 -
Lele48g0510 207 Gene3D Ribulose bisphosphate carboxylase, small subunit 82 207 IPR036385 -
Lele48g0510 207 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 82 207 - -
Lele48g0510 207 SMART RuBisCO_small_2_a 92 201 IPR000894 -
Lele48g0510 207 Pfam Ribulose bisphosphate carboxylase, small chain 93 201 IPR000894 -
Lele48g0510 207 SUPERFAMILY RuBisCO, small subunit 82 203 IPR036385 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0510 Lele-ChrLele48 4888103 4890105 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g0510 48 4888103 4890105 Lele48g0510 48 4888103 4890105 ECH
Lele45g0905 45 19780160 19781283 Lele48g0510 48 4888103 4890105 hybridization
Lele46g0985 46 17676939 17677710 Lele48g0510 48 4888103 4890105 hybridization