Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0985 ATGGCTTCCTCTGTGCTCTCTTCCGCCGTCACTCCTGTCCAGACCAACAAGGTCGCCGCCTTCACCGGTCTCAAGTCCGGCGCCTTGCCCGTGAGCAAGAAGATCAACACCGACATTACCTCCATTGCTAGCAATGGTGGGAGAGTAAGCTGCATGCTGGTGTGGCCCCCATTGGGCAGGAAGAAGTTTGAGACTCTCTCCTACCTCCCACCTCTCTCCCGTGAATCTTTGTTGAAGGAAGTTGAGTACCTTCTGAGAAAGGGATGGATTCCTTGCTTGGAGTTCGAAGTAAAGGAAGCATTTGTGTACCGTGAGAACAACAGGTCCCCAGGGTACTATGACGGAAGATACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACAGACGCCACCCAGGTCTTGAATGAGGTCGATGAGGCCGTAAAGGAGTACCCTTATGCTCACGTCAGAATCATCGGATTCGACAACACTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTACAAGCCACCAGGAAGCGAAGGCGCCTAA 534 0.5337 MASSVLSSAVTPVQTNKVAAFTGLKSGALPVSKKINTDITSIASNGGRVSCMLVWPPLGRKKFETLSYLPPLSRESLLKEVEYLLRKGWIPCLEFEVKEAFVYRENNRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVDEAVKEYPYAHVRIIGFDNTRQVQCISFIAYKPPGSEGA 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0985 177 SUPERFAMILY RuBisCO, small subunit 52 173 IPR036385 -
Lele46g0985 177 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 38 IPR024680 -
Lele46g0985 177 CDD RuBisCO_small 61 171 IPR000894 -
Lele46g0985 177 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 172 IPR024681 -
Lele46g0985 177 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 61 172 IPR000894 -
Lele46g0985 177 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 52 177 - -
Lele46g0985 177 Pfam Ribulose bisphosphate carboxylase, small chain 63 171 IPR000894 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 14 31 IPR024681 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 40 58 IPR024681 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 89 104 IPR024681 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 111 140 IPR024681 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 61 87 IPR024681 -
Lele46g0985 177 PRINTS RuBisCO small subunit signature 145 171 IPR024681 -
Lele46g0985 177 SMART RuBisCO_small_2_a 62 171 IPR000894 -
Lele46g0985 177 Gene3D Ribulose bisphosphate carboxylase, small subunit 52 177 IPR036385 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0985 Lele-ChrLele46 17676939 17677710 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0985 46 17676939 17677710 Lele46g0985 46 17676939 17677710 ECH
Lele46g0985 46 17676939 17677710 Lele47g0489 47 3877311 3878406 hybridization
Lele46g0985 46 17676939 17677710 Lele48g0510 48 4888103 4890105 hybridization