Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0905 ATGGCTTCCTCTGTCCTCTCATCTGCCGCCGTCACCACCGTCACCCCCGCCCAGACCAACAAGGTCGCTGCCTTCACCGGTCTCAAGTCAGGCGCCGGCTTGCCTATGAGCAAGAAGATCAACACCGACATCACCTCCATTGCTAGCAATGGTGGGAGAGTAAGCTGCATGCTGGTATGGCCCCCATTGGGCAGGAAGAAGTTTGAGACTCTCTCCTACCTTCCACCTCTCTCCCGTGAATCTTTGTTCAAGGAAGTTGAGTACCTTCTGAGGAACAGATGGGTTCCTTGCTTGGAATTCCAAGTTGACAACCCATTTGTGTCCCGTGAGAACAACAGGTCACCAGGGTACTATGACGGAAGATACTGGACAATGTGGAAGCTTCCCATGTTCGGATGCACAGACCCCGGCCAGGTCTTGAAGGAGGTCGACGAGGCCGTTAAGGCGTACCCTGCGTGTCACGTTAGAATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCACCAGGAAGCGAAGGCGCCTAA 549 0.5428 MASSVLSSAAVTTVTPAQTNKVAAFTGLKSGAGLPMSKKINTDITSIASNGGRVSCMLVWPPLGRKKFETLSYLPPLSRESLFKEVEYLLRNRWVPCLEFQVDNPFVSRENNRSPGYYDGRYWTMWKLPMFGCTDPGQVLKEVDEAVKAYPACHVRIIGFDNVRQVQCISFIAYKPPGSEGA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0905 182 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 43 IPR024680 -
Lele45g0905 182 Gene3D Ribulose bisphosphate carboxylase, small subunit 57 182 IPR036385 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 150 176 IPR024681 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 45 63 IPR024681 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 116 145 IPR024681 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 18 35 IPR024681 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 94 109 IPR024681 -
Lele45g0905 182 PRINTS RuBisCO small subunit signature 66 92 IPR024681 -
Lele45g0905 182 SMART RuBisCO_small_2_a 67 176 IPR000894 -
Lele45g0905 182 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 57 182 - -
Lele45g0905 182 Pfam Ribulose bisphosphate carboxylase, small chain 68 176 IPR000894 -
Lele45g0905 182 CDD RuBisCO_small 66 176 IPR000894 -
Lele45g0905 182 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 66 177 IPR000894 -
Lele45g0905 182 SUPERFAMILY RuBisCO, small subunit 57 178 IPR036385 -
Lele45g0905 182 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 177 IPR024681 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0905 Lele-ChrLele45 19780160 19781283 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0905 45 19780160 19781283 Lele45g0905 45 19780160 19781283 ECH
Lele45g0905 45 19780160 19781283 Lele47g0489 47 3877311 3878406 hybridization
Lele45g0905 45 19780160 19781283 Lele48g0510 48 4888103 4890105 hybridization