Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0145 ATGGAGGGAGCTGGAGGTGGCAGTGCTTCGGCTGCTGCACCTGTAAACCAGGGGGTGCAGGACTTTTTGAGGCTCTTTCAATATTATCTGGATAAAACTACTCCTCATACTACGTATAGATGGATTGGGAGTTTGGTTTTGGCATCAATCTATGCTTTGAGGGTTTATTATGTCCAAGGATTCTACATTGTGTCTTATGGTCTGGGAATCTATTTGCTGAATCTGTTGATTGGGTTTCTGTCCCCTTTGGTTGATCCGGAGCTGGAACCTTCAGGTGGATCTCTGCTGCCAACTAAAGGTTCTGATGAGTTCAAACCTTTCATTCGCCGACTTCCTGAATTTAAGTTCTGGTATTCTTTCACAAAAGCTTTCTGCATAGCTTTTATCATGACCTTCTTTTCTGTATTTGATGTCCCTGTCTTTTGGCCTATACTACTCTGTTACTGGATTGTTCTGTTTGTCCTTACCACGAGGCGCCAAATTGCACACATGATCAAATACAAATATGTCCCATTCAACATCGGAAAGCAGGTCGAAAGTATAGCAGTAAGAAGCCTTCTGCAAGAAGTAGTGGATCTCGAGCAGAATGAAGCTAGGCTGTTGCATGCTCTGAAGGATACTCATTTACTGGATTGA 636 0.4308 MEGAGGGSASAAAPVNQGVQDFLRLFQYYLDKTTPHTTYRWIGSLVLASIYALRVYYVQGFYIVSYGLGIYLLNLLIGFLSPLVDPELEPSGGSLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFIMTFFSVFDVPVFWPILLCYWIVLFVLTTRRQIAHMIKYKYVPFNIGKQVESIAVRSLLQEVVDLEQNEARLLHALKDTHLLD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0145 211 PIRSF AtER_Rer1p 1 186 IPR004932 GO:0016020
Lele48g0145 211 Pfam Rer1 family 20 177 IPR004932 GO:0016020
Lele48g0145 211 PANTHER PROTEIN RER1 9 178 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0145 Lele-ChrLele48 1710966 1713056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0145 1 177 Miscellaneous Gene Families AT2G21600 79.096 1.11e-104 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1269 45 22615330 22617218 Lele48g0145 48 1710966 1713056 hybridization
Lele46g1361 46 20631413 20633580 Lele48g0145 48 1710966 1713056 hybridization